Package: BamScaleR
Type: Package
Title: Bioconductor-Friendly Multithreaded BAM Processing
Version: 0.99.2
Authors@R: c(
    person("Chirag", "Parsania", email = "chirag.parsania@gmail.com", role = c("aut", "cre"))
  )
Description: Multithreaded sequential BAM processing built on top of
        the ompBAM C++ engine. BamScaleR provides user-friendly BAM
        read and scan interfaces designed for compatibility with
        existing Bioconductor workflows.
License: MIT + file LICENSE
biocViews: Software, DataImport, Sequencing, Coverage, Alignment,
        QualityControl
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports: BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb,
        GenomicAlignments, GenomicRanges, IRanges, methods, ompBAM,
        Rcpp, Rsamtools, S4Vectors
LinkingTo: Rcpp, ompBAM, S4Vectors, IRanges, XVector
Suggests: BiocStyle, chipseqDBData, dplyr, ExperimentHub, ggplot2,
        knitr, readr, rmarkdown, rtracklayer, scales, tibble, testthat
        (>= 3.0.0), tidyr
VignetteBuilder: knitr
Config/testthat/edition: 3
SystemRequirements: C++17, OpenMP
NeedsCompilation: yes
URL: https://cparsania.github.io/BamScaleR/
BugReports: https://github.com/cparsania/BamScaleR/issues
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libbz2-dev liblzma-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-13 04:12:14 UTC
RemoteUrl: https://github.com/BiocStaging/BamScaleR
RemoteRef: HEAD
RemoteSha: 5918290c5d218b00e29ac3e93a1f9e85e7e46817
Packaged: 2026-10-13 12:03:34 UTC; root
Author: Chirag Parsania [aut, cre]
Maintainer: Chirag Parsania <chirag.parsania@gmail.com>