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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CMEnt" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'CMEnt: Characterization of Methylation using positional ENTanglement'
version: 0.99.4
doi: 10.32614/CRAN.package.CMEnt
abstract: CMEnt implements a correlation-based method for identifying Differentially
  Methylated Regions (DMRs) from genomic seeds, commonly Differentially Methylated
  Positions (DMPs). The package expands regions around significant seeds considering
  both statistical significance and biological relevance of methylation changes. It
  supports array-based (450K, EPIC, EPICv2) and NGS methylation data through tabix-indexed
  files, provides DMR interaction analysis via motif similarity, and includes comprehensive
  visualization tools including circos plots and beta value heatmaps.
authors:
- family-names: Lemonidis
  given-names: Vasileios
  email: vasileios.lemonidis@uantwerpen.be
  orcid: https://orcid.org/0000-0002-6446-3536
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/CMG-UA/CMEnt
commit: 898671e82578a3b7acb99f333f7e5535b036f8d1
url: https://cmg-ua.github.io/CMEnt/
date-released: '2026-06-12'
contact:
- family-names: Lemonidis
  given-names: Vasileios
  email: vasileios.lemonidis@uantwerpen.be
  orcid: https://orcid.org/0000-0002-6446-3536