| Title: | ACMG/AMP Germline Variant Interpretation from Annotated VCF Files |
|---|---|
| Description: | ClinicalVariantR is an interactive Shiny platform for evidence-based germline variant classification under ACMG/AMP 2015 guidelines. It accepts VEP-, SnpEff-, or ANNOVAR-annotated VCF files, applies automated and curator-guided ACMG criteria, supports streaming analysis of large call sets, and exports structured per-criterion evidence with reproducibility metadata. |
| Authors: | Safa Rafique [aut, cre] (ORCID: 0000-0003-2646-8106), Naeem Mahmood [aut], Muhammad Farooq Sabar [aut] |
| Maintainer: | Safa Rafique <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 0.99.0 |
| Built: | 2026-07-16 20:40:24 UTC |
| Source: | https://github.com/BiocStaging/ClinicalVariantR |
Returns a Shiny app object for ACMG/AMP germline variant classification.
Following Bioconductor Shiny guidelines, this function returns the app
and does not launch it. Call shiny::runApp() yourself.
ClinicalVariantR(...) ClinicalVariantRApp(...)ClinicalVariantR(...) ClinicalVariantRApp(...)
... |
Reserved for future options (currently ignored). |
A shiny.appobj created by shiny::shinyApp().
stopifnot(is.function(ClinicalVariantR)) # To launch interactively: # shiny::runApp(ClinicalVariantR())stopifnot(is.function(ClinicalVariantR)) # To launch interactively: # shiny::runApp(ClinicalVariantR())