NEWS
CySA 0.99.7
Bioconductor submission fixes
- Converted vignette R code chunks to 4-space indentation.
CySA 0.99.6
Bioconductor submission fixes
- Ensured all R source indentation is an exact multiple of 4 spaces.
CySA 0.99.5
Bioconductor submission fixes
- Fixed remaining indentation outliers (hanging indents and manually edited
blocks) so all R source lines use multiples of 4 spaces.
CySA 0.99.4
Bioconductor submission fixes
- Converted R source files from 2-space to 4-space indentation to conform to
Bioconductor style guidelines.
CySA 0.99.3
Bioconductor submission fixes
- Wrapped the second occurrence of a long
outputList[["Rest"]] assignment.
CySA 0.99.2
Bioconductor submission fixes
- Wrapped remaining long lines flagged by
BiocCheck.
CySA 0.99.1
Bioconductor submission fixes
- Replaced
<<- with shiny::reactiveVal() for app state.
- Removed debug
cat()/print() calls; kept print() only inside PDF device
context.
- Applied
styler formatting and wrapped selected long lines.
CySA 0.99.0
New features
- Initial Bioconductor submission of
CySA, an interactive Shiny dashboard for
selecting and visualizing clusters from flow-cytometry data stored in
SingleCellExperiment objects.
clusterSelector() returns a Shiny app object that can be launched with
shiny::runApp().prepClusterSelectorData() subsamples a SingleCellExperiment and builds the
inputs required by clusterSelector().plotSOMScatter() and plotScatterBJ() provide ggplot2-based SOM and scatter
visualizations.
Bioconductor readiness
- Replaced broad package-level
@import directives with targeted
@importFrom roxygen tags to reduce namespace masking.
- Removed the archived
ggthemr dependency; theming now uses theme_minimal()
and explicit scale_*_manual() scales.
- Added
NEWS.md, expanded README.Rmd, and a package vignette.