Changes in version 0.99.7                        

Bioconductor submission fixes

  - Converted vignette R code chunks to 4-space indentation.

                       Changes in version 0.99.6                        

Bioconductor submission fixes

  - Ensured all R source indentation is an exact multiple of 4 spaces.

                       Changes in version 0.99.5                        

Bioconductor submission fixes

  - Fixed remaining indentation outliers (hanging indents and manually
    edited blocks) so all R source lines use multiples of 4 spaces.

                       Changes in version 0.99.4                        

Bioconductor submission fixes

  - Converted R source files from 2-space to 4-space indentation to
    conform to Bioconductor style guidelines.

                       Changes in version 0.99.3                        

Bioconductor submission fixes

  - Wrapped the second occurrence of a long outputList[["Rest"]]
    assignment.

                       Changes in version 0.99.2                        

Bioconductor submission fixes

  - Wrapped remaining long lines flagged by BiocCheck.

                       Changes in version 0.99.1                        

Bioconductor submission fixes

  - Replaced <<- with shiny::reactiveVal() for app state.
  - Removed debug cat()/print() calls; kept print() only inside PDF
    device context.
  - Applied styler formatting and wrapped selected long lines.

                       Changes in version 0.99.0                        

New features

  - Initial Bioconductor submission of CySA, an interactive Shiny
    dashboard for selecting and visualizing clusters from flow-cytometry
    data stored in SingleCellExperiment objects.
  - clusterSelector() returns a Shiny app object that can be launched
    with shiny::runApp().
  - prepClusterSelectorData() subsamples a SingleCellExperiment and
    builds the inputs required by clusterSelector().
  - plotSOMScatter() and plotScatterBJ() provide ggplot2-based SOM and
    scatter visualizations.

Bioconductor readiness

  - Replaced broad package-level @import directives with targeted
    @importFrom roxygen tags to reduce namespace masking.
  - Removed the archived ggthemr dependency; theming now uses
    theme_minimal() and explicit scale_*_manual() scales.
  - Added NEWS.md, expanded README.Rmd, and a package vignette.