Package: DgeaHeatmap
Title: Implementation of Functions to Analyze Nanostring and Other Data
        for DGE and to Generate Heatmaps
Version: 0.99.0
Depends: R (>= 4.4.0)
Authors@R: 
    c(
      person("Leonie Johanna", "Lancelle",
             email = "leonie.lancelle@uni-bielefeld.de",
             role = c("aut", "cre"),
             comment = c(ORCID = "0009-0004-3138-0752"))
    )
Description: Package for data extraction from Nanostring GeoMx DSP
        data, also works for other data. Simple functions for
        Differential Expression Analysis. User-friendly and highly
        customizable functions for heatmap generation.
License: GPL-3 + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
biocViews: Bayesian,Clustering, DifferentialExpression, GeneExpression,
        Normalization, PrincipalComponent, RNASeq, Regression,
        Sequencing, Software, Transcription, AlternativeSplicing,
        BatchEffect,BiomedicalInformatics, CellBiology,
        Cheminformatics, DataImport, DifferentialSplicing, Epigenetics,
        ExonArray, FunctionalGenomics, GeneSetEnrichment, Genetics,
        ImmunoOncology, Metabolomics, MicroRNAArray, Microarray,
        MultipleComparison, OneChannel, Preprocessing,
        ProprietaryPlatforms, Proteomics, QualityControl,
        SystemsBiology, TimeCourse, TwoChannel, mRNAMicroarray
Imports: BiocGenerics, ComplexHeatmap, RColorBrewer, purrr, magrittr,
        rlang, NanoStringNCTools, Biobase, GeomxTools, stats, limma,
        edgeR, utils, DESeq2, SummarizedExperiment, dplyr
URL: https://gitlab.ub.uni-bielefeld.de/spittaulab/Dgea_Heatmap_Package
BugReports: https://gitlab.ub.uni-bielefeld.de/spittaulab/Dgea_Heatmap_Package/-/issues
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), tibble,
        tidyr, tidyverse, EnvStats, GeoMxWorkflows, VennDiagram,
        ggiraph, stringr, ggvenn, data.table
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libuv1-dev
        libssl-dev perl zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-20 09:37:47 UTC
RemoteUrl: https://github.com/BiocStaging/DgeaHeatmap
RemoteRef: HEAD
RemoteSha: 65a509be682ef287f8d7158d8a9555e8ad95e845
NeedsCompilation: no
Packaged: 2026-07-21 14:46:37 UTC; root
Author: Leonie Johanna Lancelle [aut, cre] (ORCID:
    <https://orcid.org/0009-0004-3138-0752>)
Maintainer: Leonie Johanna Lancelle <leonie.lancelle@uni-bielefeld.de>