Package: DuckDBGRanges
Version: 0.99.1
Date: 2026-07-22
Title: DuckDB-Backed GenomicRanges Implementation
Description: Provides DuckDB-backed implementations of GenomicRanges
        data structures for efficient, out-of-memory operations on
        large genomic interval datasets. The package includes
        DuckDBGRanges and DuckDBGRangesList classes with optimized
        range operations including restrict, flank, shift,
        findOverlaps, and distance calculations. Ideal for variant
        analysis, scATAC-seq peak analysis, and other genomic workflows
        requiring memory-efficient range operations on large datasets.
Authors@R: 
    c(
        person("Patrick", "Aboyoun", role=c("aut", "cre"), email="aboyounp@gene.com"),
        person("Genentech, Inc.", role="cph")
    )
License: MIT + file LICENSE
Depends: R (>= 4.5.0), methods, stats, DuckDBDataFrame, GenomicRanges
Imports: bit64, BiocGenerics, S4Vectors, IRanges, Seqinfo,
        DelayedArray, DBI, dplyr, dbplyr
Suggests: knitr, rmarkdown, BiocStyle, testthat, microbenchmark, arrow,
        TxDb.Hsapiens.UCSC.hg38.knownGene
biocViews: DataImport, DataRepresentation, Infrastructure, Sequencing,
        Software
VignetteBuilder: knitr
Encoding: UTF-8
Collate: 'DuckDBGRanges-class.R' 'DuckDBGRanges-utils.R'
        'DuckDBGRangesList-class.R' 'DuckDBGRangesList-utils.R'
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libicu-dev libssl-dev xz-utils zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-22 15:38:50 UTC
RemoteUrl: https://github.com/BiocStaging/DuckDBGRanges
RemoteRef: HEAD
RemoteSha: d4feb322320ae525910ee224d6be15b8d9909ff1
NeedsCompilation: no
Packaged: 2026-07-23 11:10:52 UTC; root
Author: Patrick Aboyoun [aut, cre],
  Genentech, Inc. [cph]
Maintainer: Patrick Aboyoun <aboyounp@gene.com>