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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "ECLIPSE" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'ECLIPSE: ECLIPSE: Enhanced CLonotypic Inference via Prediction of Single-cell
  Expression'
version: 0.99.0
doi: 10.32614/CRAN.package.ECLIPSE
abstract: This package is used for the analysis of single-cell T cell receptor sequencing
  data (scTCR-seq). ECLIPSE maps chain pairings across a sample to predict the true
  clonotype of each cell, unlike other methods which only consider the chains that
  are sequenced in each cell. Seurat objects and Cell Ranger vdj/multi contig files
  are required as inputs.
authors:
- family-names: Burns
  given-names: Ethan
  email: ethan.burns@yale.edu
  orcid: https://orcid.org/0009-0009-8061-3686
- family-names: Braun
  given-names: David
  email: david.braun@yale.edu
  orcid: https://orcid.org/0000-0003-4543-5553
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/eburns10/ECLIPSE
commit: 7f479a65a103929141e892a777f36cd546141857
url: https://github.com/eburns10/ECLIPSE
date-released: '2026-08-11'
contact:
- family-names: Burns
  given-names: Ethan
  email: ethan.burns@yale.edu
  orcid: https://orcid.org/0009-0009-8061-3686