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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GPlinksR" in publications use:'
type: software
license: MIT
title: 'GPlinksR: Building Gene-Peak Network for ATAC-RNA Integration'
version: 0.99.0
abstract: GPlinksR constructs gene-peak regulatory networks for ATAC-RNA integration
  by combining enhancer-based, promoter-based, and proximity (closest-gene) mappings.
  The package accepts direct peak and gene vectors as well as container-based inputs
  through a wrapper for common Bioconductor object classes. Enhancer-gene links are
  obtained from the PEREGRINE enhancer-gene datasets provided by AnnoQ, while promoter
  and gene coordinates are retrieved from EnsDb.Hsapiens.v86.
authors:
- family-names: Wang
  given-names: Xinran
  email: xwang210@usc.edu
  orcid: https://orcid.org/0009-0000-1805-3280
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/Corawang123/GPlinksR
commit: f87b135092e6c93b6d6e404352055fd685fc27ad
url: https://github.com/Corawang123/GPlinksR
date-released: '2026-05-21'
contact:
- family-names: Wang
  given-names: Xinran
  email: xwang210@usc.edu
  orcid: https://orcid.org/0009-0000-1805-3280