Package: GeneSCARAB
Title: Gene Set Circular Analysis for Rhythms Ascertainment in
        Bioprocesses
Version: 0.99.3
Authors@R: c(
    person("Marcos", "Ramos-González", email = "mramos5@us.es", role = c("aut", "cre"), comment=c(ORCID="0000-0001-9130-586X")),
    person("Emma", "Serrano-Pérez", email = "enma.serrano@ibvf.csic.es", role = "ctb", comment=c(ORCID="0000-0001-9350-7342")),
    person("Víctor", "Ramos-González", email = "vramos1@us.es", role = "ctb", comment=c(ORCID="0000-0002-5452-9394")),
    person("Mercedes", "García-González", email = "mggonza@us.es", role = "ctb", comment=c(ORCID="0000-0003-0375-8493")),
    person("Francisco J.", "Romero-Campero", email = "fran@us.es", role = "ctb", comment=c(ORCID="0000-0001-9834-030X")))
Description: GeneSCARAB includes a range of features designed to enable
        a robust and comprehensive analysis of the circular
        distributions of biomolecules (genes, proteins, metabolites,
        ...) associated with bioprocesses in any species. It is
        specifically designed for circadian omics studies and
        facilitates data organization, statistical analysis, and the
        visualization of results. It works with the output of standard
        rhythm detection software, such as CircaCompare, MetaCycle or
        RAIN.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Imports: BiocGenerics, circlize, CircMLE, circular, ComplexHeatmap,
        Directional, GO.db, grid, KEGGREST, MetBrewer, OptCirClust,
        AnnotationDbi, methods
Depends: R (>= 4.5.0)
LazyData: false
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
biocViews: Genetics, MultipleComparison, Proteomics, Software,
        SystemsBiology, TimeCourse, Transcriptomics, StatisticalMethod
URL: https://github.com/ramosgonzmarc/GeneSCARAB
BugReports: https://github.com/ramosgonzmarc/GeneSCARAB
Config/testthat/edition: 3
Config/pak/sysreqs: libabsl-dev cmake libfreetype6-dev libgdal-dev
        gdal-bin libgeos-dev libglu1-mesa-dev make libgsl0-dev texlive
        libicu-dev libpng-dev libuv1-dev libgl1-mesa-dev libssl-dev
        perl libproj-dev libsqlite3-dev libudunits2-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-03 14:17:25 UTC
RemoteUrl: https://github.com/BiocStaging/GeneSCARAB
RemoteRef: HEAD
RemoteSha: ea64178b43536454a2db5ca289608cd20a39a178
NeedsCompilation: no
Packaged: 2026-10-10 17:28:42 UTC; root
Author: Marcos Ramos-González [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9130-586X>),
  Emma Serrano-Pérez [ctb] (ORCID:
    <https://orcid.org/0000-0001-9350-7342>),
  Víctor Ramos-González [ctb] (ORCID:
    <https://orcid.org/0000-0002-5452-9394>),
  Mercedes García-González [ctb] (ORCID:
    <https://orcid.org/0000-0003-0375-8493>),
  Francisco J. Romero-Campero [ctb] (ORCID:
    <https://orcid.org/0000-0001-9834-030X>)
Maintainer: Marcos Ramos-González <mramos5@us.es>