Package: GeneTrackR
Type: Package
Title: Genomic Track Visualization and Haplotype Analysis
Version: 0.99.2
Date: 2026-09-01
Authors@R: person(given = "Shuchao", family = "Ren", role = c("aut", "cre"),
    email = "rensc0718@163.com")
Description: Provides tools to read, validate, query, transform, write,
        and visualize gene annotations, genomic signal tracks, and
        variant tracks using a shared genomic coordinate framework.
        Supports GenePred, GTF, GFF3, and BED annotations; bedGraph,
        wig, and bigWig signals; VCF variants; integrated locus
        visualization; haplotype construction; phenotype association;
        linkage disequilibrium; haplotype refinement; and
        variant-effect analysis. The package interoperates with
        GenomicRanges objects and uses a pure-R signal I/O layer so
        core workflows do not require a compiled extension.
License: GPL-3
URL: https://renscq.github.io/GeneTrackR/,
        https://github.com/Renscq/GeneTrackR
BugReports: https://github.com/Renscq/GeneTrackR/issues
biocViews: Software, GenomeAnnotation, VariantAnnotation, Coverage,
        Sequencing, Visualization
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.5.0)
Imports: data.table, ggplot2, patchwork, rlang, utils, stats, grid,
        grDevices, tools, GenomicRanges, IRanges, S4Vectors,
        RColorBrewer
Suggests: testthat (>= 3.0.0), roxygen2, knitr, rmarkdown, Rsamtools,
        openxlsx
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/Needs/website: pkgdown
NeedsCompilation: no
Config/roxygen2/version: 8.1.0
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-01 09:05:02 UTC
RemoteUrl: https://github.com/BiocStaging/GeneTrackR
RemoteRef: HEAD
RemoteSha: 5d4a1b2b9dc145527eafe4a201bc5d838feeffb5
Packaged: 2026-10-01 12:58:19 UTC; root
Author: Shuchao Ren [aut, cre]
Maintainer: Shuchao Ren <rensc0718@163.com>