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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "HTAN" in publications use:'
type: software
license: MIT
title: 'HTAN: Query and Retrieve Human Tumor Atlas Network (HTAN) Open-Access Data'
version: 0.99.1
abstract: A client for the open-access data of the Human Tumor Atlas Network (HTAN),
  Phase 1. File, biospecimen, clinical and provenance metadata are queried locally
  from a versioned parquet snapshot of the ISB-CGC HTAN BigQuery release tables, through
  DuckDB and dbplyr, with no Google account. Open-access files are downloaded from
  the CRDC General Commons (anonymous GA4GH DRS) or Synapse (personal access token),
  and common HTAN file formats are read into Bioconductor classes such as SingleCellExperiment,
  SpatialExperiment and MultiAssayExperiment.
authors:
- family-names: Davis
  given-names: Sean
  email: seandavi@gmail.com
  orcid: https://orcid.org/0000-0002-8991-6458
preferred-citation:
  type: manual
  title: 'HTAN: Query and Retrieve Human Tumor Atlas Network (HTAN) Open-Access Data'
  authors:
  - family-names: Davis
    given-names: Sean
    email: seandavi@gmail.com
    orcid: https://orcid.org/0000-0002-8991-6458
  year: '2026'
  notes: R package version 0.99.1
  url: https://github.com/seandavi/HTAN
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/seandavi/HTAN
commit: 9efae6be0a2e316df55df7d59f93f7b2c44b39a2
url: https://seandavi.github.io/HTAN/
date-released: '2026-10-14'
contact:
- family-names: Davis
  given-names: Sean
  email: seandavi@gmail.com
  orcid: https://orcid.org/0000-0002-8991-6458
references:
- type: article
  title: 'The Human Tumor Atlas Network: Charting Tumor Transitions across Space and
    Time at Single-Cell Resolution'
  authors:
  - family-names: Rozenblatt-Rosen
    given-names: Orit
  - family-names: Regev
    given-names: Aviv
  - family-names: Oberdoerffer
    given-names: Philipp
  - name: others
  journal: Cell
  year: '2020'
  volume: '181'
  issue: '2'
  doi: 10.1016/j.cell.2020.03.053
  notes: 'PMID: 32302568'
  start: '236'
  end: '249'