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# CITATION.cff file created with {cffr} R package
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cff-version: 1.2.0
message: 'To cite package "LongOmicsTraj" in publications use:'
type: software
license: GPL-3.0-only
title: 'LongOmicsTraj: Longitudinal Omics Trajectory Clustering and Analysis Engine'
version: 0.99.0
doi: 10.32614/CRAN.package.LongOmicsTraj
abstract: Provides methods for estimating, classifying and comparing longitudinal
  molecular trajectories across repeated study visits using empirical, mixed-effects,
  generalized additive model and polynomial regression estimators. Consecutive molecular
  changes are converted into interpretable Omics Trajectory Signatures (OTS) describing
  stable, sustained, transient and rebound temporal behaviours, enabling topology-
  aware clustering and consensus trajectory inference. LongOmicsTraj further provides
  a flexible query framework for directly retrieving molecular features satisfying
  simple or complex trajectory definitions, including multi-transition patterns, logical
  combinations of trajectory states, group-specific behaviours, and comparisons of
  trajectory topologies across treatment arms, experimental conditions or other longitudinal
  study arms.
authors:
- family-names: Zounemat-Kermani
  given-names: Nazanin
  email: nonakermani@gmail.com
  orcid: https://orcid.org/0000-0003-2479-3861
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/nzkermani/LongOmicsTraj
commit: c92f35a6d48426c6164fd02a12b89bec01bddeec
url: https://github.com/nzkermani/LongOmicsTraj
date-released: '2026-08-04'
contact:
- family-names: Zounemat-Kermani
  given-names: Nazanin
  email: nonakermani@gmail.com
  orcid: https://orcid.org/0000-0003-2479-3861