Welcome to LongOmicsTraj. This package is designed to
cluster and monitor long time-series MultiAssayExperiment omics
structures.
sessionInfo()
#> R version 4.6.1 (2026-06-24)
#> Platform: x86_64-pc-linux-gnu
#> Running under: Ubuntu 26.04.1 LTS
#>
#> Matrix products: default
#> BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
#> LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.32.so; LAPACK version 3.12.0
#>
#> locale:
#> [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
#> [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
#> [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
#> [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
#> [9] LC_ADDRESS=C LC_TELEPHONE=C
#> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
#>
#> time zone: Etc/UTC
#> tzcode source: system (glibc)
#>
#> attached base packages:
#> [1] stats4 stats graphics grDevices utils datasets methods
#> [8] base
#>
#> other attached packages:
#> [1] BiocStyle_2.41.0 scales_1.4.0
#> [3] ggplot2_4.0.3 tibble_3.3.1
#> [5] tidyr_1.3.2 dplyr_1.2.1
#> [7] LongOmicsTraj_0.99.0 MultiAssayExperiment_1.39.1
#> [9] SummarizedExperiment_1.43.0 Biobase_2.73.2
#> [11] GenomicRanges_1.65.4 Seqinfo_1.3.2
#> [13] IRanges_2.47.5 S4Vectors_0.51.10
#> [15] BiocGenerics_0.59.12 generics_0.1.4
#> [17] MatrixGenerics_1.25.0 matrixStats_1.5.0
#> [19] rmarkdown_2.32
#>
#> loaded via a namespace (and not attached):
#> [1] utf8_1.2.6 sass_0.4.10 SparseArray_1.13.4
#> [4] lattice_0.23-1 digest_0.6.39 magrittr_2.0.5
#> [7] RColorBrewer_1.1-3 evaluate_1.0.5 grid_4.6.1
#> [10] fastmap_1.2.0 jsonlite_2.0.0 Matrix_1.7-6
#> [13] nnet_7.3-21 BiocManager_1.30.27 purrr_1.2.2
#> [16] modeltools_0.2-25 jquerylib_0.1.4 abind_1.4-8
#> [19] cli_3.6.6 rlang_1.3.0 XVector_0.53.0
#> [22] withr_3.0.3 cachem_1.1.0 DelayedArray_0.39.8
#> [25] yaml_2.3.12 otel_0.2.0 S4Arrays_1.13.2
#> [28] flexmix_2.3-21 tools_4.6.1 buildtools_1.0.0
#> [31] vctrs_0.7.3 R6_2.6.1 lifecycle_1.0.5
#> [34] cluster_2.1.8.3 pkgconfig_2.0.3 gtable_0.3.6
#> [37] bslib_0.12.0 pillar_1.11.1 data.table_1.18.6.1
#> [40] glue_1.8.1 xfun_0.61 tidyselect_1.2.1
#> [43] sys_3.4.3 knitr_1.52 farver_2.1.2
#> [46] patchwork_1.3.2 htmltools_0.5.9 labeling_0.4.3
#> [49] maketools_1.3.2 compiler_4.6.1 S7_0.2.2