# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "MetaPathNet" in publications use:'
type: software
license: MIT
title: 'MetaPathNet: KEGG-Based Metabolic and Signaling Network Analysis for Systems
  Biology'
version: 0.99.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.MetaPathNet
abstract: Provides tools to construct KEGG-based metabolic and signaling networks
  as edge lists for single-organism or cross-species analyses. The package supports
  identifier mapping, shortest-path and topology analyses, community detection, permutation
  testing, pathway over-representation analysis, and node annotation for host-microbiome
  studies. It also provides network visualisation in R and Cytoscape and supports
  extension of KEGG-based networks through additional reaction resources and user-defined
  reactions.
authors:
- family-names: Wang
  given-names: Zhaojie
  email: zhaojie.wang@cnrs.fr
  orcid: https://orcid.org/0009-0009-7191-2107
- family-names: Puig-Castellvi
  given-names: Francesc
- family-names: Jia
  given-names: Manyi
- family-names: Dumas
  given-names: Marc-Emmanuel
preferred-citation:
  type: manual
  title: 'MetaPathNet: KEGG-Based Metabolic and Signaling Network Analysis for Systems
    Biology'
  authors:
  - family-names: Wang
    given-names: Zhaojie
    email: zhaojie.wang@cnrs.fr
    orcid: https://orcid.org/0009-0009-7191-2107
  - family-names: Puig-Castellvi
    given-names: Francesc
  - family-names: Jia
    given-names: Manyi
  - family-names: Dumas
    given-names: Marc-Emmanuel
  year: '2026'
  notes: R package version 0.99.0
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/zhaojie-wang/MetaPathNet
commit: e932e76d01596bfd709804dd71bf6777adeff628
url: https://github.com/zhaojie-wang/MetaPathNet
date-released: '2026-06-09'
contact:
- family-names: Wang
  given-names: Zhaojie
  email: zhaojie.wang@cnrs.fr
  orcid: https://orcid.org/0009-0009-7191-2107