Package: MiCARA
Title: Microbiome Confounder-Adjusted Robust Analysis
Version: 0.99.2
Authors@R: 
    person("Safa", "Bushnaq", , "19397747@brookes.ac.uk", role = c("aut", "cre"),
           comment = c(ORCID = "0009-0000-3723-5725"))
Description: Provides a comprehensive framework for multi-cohort
        microbiome differential abundance and residual correlation
        analysis. It integrates confounder-adjusted linear models with
        centered log-ratio transformed taxonomic and functional pathway
        profiles.  The package features robust preprocessing, automated
        covariate handling, multiple-testing correction, and quality
        control diagnostics for multi-omics data.  Interactive
        visualization tools are included to facilitate downstream
        interpretation of cross-domain interaction networks.
License: MIT + file LICENSE
URL: https://github.com/BushnaqSafa/MiCARA
BugReports: https://github.com/BushnaqSafa/MiCARA/issues
Depends: R (>= 4.5.0)
Imports: ANCOMBC, Hmisc, htmlwidgets, mice, networkD3, phyloseq, stats,
        utils
Suggests: knitr, microbiome, rmarkdown, testthat (>= 3.0.0), webshot,
        webshot2
VignetteBuilder: knitr
biocViews: Microbiome, DifferentialExpression, Software, Metagenomics,
        NetworkInference, Pathways, Network, Preprocessing,
        QualityControl
Config/roxygen2/version: 8.1.0
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: cmake libglpk-dev make libgsl0-dev libicu-dev
        libuv1-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-06 17:51:09 UTC
RemoteUrl: https://github.com/BiocStaging/MiCARA
RemoteRef: HEAD
RemoteSha: efe9bb0dda7cd1be02bf6b8f11eecfbb3a919c88
NeedsCompilation: no
Packaged: 2026-10-04 14:42:08 UTC; root
Author: Safa Bushnaq [aut, cre] (ORCID:
    <https://orcid.org/0009-0000-3723-5725>)
Maintainer: Safa Bushnaq <19397747@brookes.ac.uk>