Package: MsBackendMetabolomicsWorkbench
Title: Retrieve Mass Spectrometry Data from Metabolomics Workbench
Version: 0.99.0
Authors@R: 
    c(person(given = "Gabriele", family = "Tomè",
             email = "gabriele.tome@eurac.edu",
             role = c("aut","cre"),
             comment = c(ORCID = "0000-0002-3976-6068",
             fnd = "MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.")),
      person(given = "Philippine", family = "Louail",
             email = "philippine.louail@eurac.edu",
             role = c("aut"),
             comment = c(ORCID = "0009-0007-5429-6846")),
      person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut"),
             comment = c(ORCID = "0000-0002-6977-7147")))
Description: Metabolomics Workbench is one of the main public
        repositories for storage of metabolomics experiments. The
        MsBackendMetabolomicsWorkbench package provides functionality
        to retrieve and represent mass spectrometry (MS) data from
        Metabolomics Workbench. Data files are downloaded and cached
        locally avoiding repetitive downloads. MS data from
        metabolomics experiments can thus be directly and seamlessly
        integrated into R-based analysis workflows with the Spectra and
        MsBackendMetabolomicsWorkbench package.
Depends: R (>= 4.2.0), Spectra (>= 1.15.12)
Imports: rvest, httr2, curl, ProtGenerics, BiocFileCache, S4Vectors,
        methods, MsCoreUtils (>= 1.23.9), jsonlite, plyr, tidyr,
        archive
Suggests: testthat, rmarkdown, mzR, knitr, BiocStyle
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsBackendMetabolomicsWorkbench/issues
URL:
        https://github.com/RforMassSpectrometry/MsBackendMetabolomicsWorkbench
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport,
        Proteomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 8.0.0
Config/pak/sysreqs: cmake make libarchive-dev libicu-dev libuv1-dev
        libxml2-dev libssl-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-06-26 14:15:51 UTC
RemoteUrl:
        https://github.com/BiocStaging/MsBackendMetabolomicsWorkbench
RemoteRef: HEAD
RemoteSha: d1577176dac8a697f0ba2f383f710620a4e317fc
NeedsCompilation: no
Packaged: 2026-06-30 13:16:09 UTC; root
Author: Gabriele Tomè [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy
    project (CUP: D53C25001030003) co-funded by the Autonomous Province
    of Bolzano under the Joint Projects South Tyrol–Germany 2025
    program.),
  Philippine Louail [aut] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>),
  Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>)
Maintainer: Gabriele Tomè <gabriele.tome@eurac.edu>