Package: MsBackendTimsTof
Title: Mass Spectrometry Data Backend for Bruker TimsTOF Files
Version: 0.99.0
Authors@R: 
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Andrea", family = "Vicini",
             email = "andrea.vicini@eurac.edu",
             role = "aut",
             comment = c(ORCID = "0000-0001-9438-6909")),
      person(given = "Steffen", family = "Neumann",
             email = "sneumann@ipb-halle.de",
             role = "ctb",
             comment = c(ORCID = "0000-0002-7899-7192")),
      person(given = "Carolin", family = "Huber",
             email = "carolin-elisabeth.huber@ufz.de",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-9355-8948")),
      person(given = "Roger", family = "Gine",
             email = "alrgibe9@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0003-0288-9619")),
      person(given = "Gabriele", family = "Tomè",
             email = "gabriele.tome@eurac.edu",
             role = c("aut"),
             comment = c(ORCID = "0000-0002-3976-6068",
             fnd = "MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program."))
	     )
Description: Mass spectrometry (MS) data backend supporting import and
        export of (ion mobility) MS data from Bruker TimsTOF files. The
        backend uses the opentimsr R package for raw data access, using
        either the proprietary C++ library from Bruker or an open
        reimplementation. The backend thus supports import of MS data
        from the original raw data files without needing to convert
        them to an open format.
Depends: R (>= 4.5), Spectra (>= 1.5.17)
Imports: IRanges, BiocParallel, methods, opentimsr (>= 1.0.11),
        MsCoreUtils, S4Vectors, ProtGenerics, RSQLite, DBI, data.table,
        dplyr
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
        rmarkdown, BiocFileCache
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsBackendTimsTof/issues
URL: https://github.com/RforMassSpectrometry/MsBackendTimsTof
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport
Roxygen: list(markdown=TRUE)
Config/roxygen2/version: 8.1.1
Config/pak/sysreqs: cmake make libuv1-dev libzstd-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-26 14:21:47 UTC
RemoteUrl: https://github.com/BiocStaging/MsBackendTimsTof
RemoteRef: HEAD
RemoteSha: a3df811f5f9852eaab6f2f765f3ce7cd05446bd7
NeedsCompilation: no
Packaged: 2026-10-26 19:33:32 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Andrea Vicini [aut] (ORCID: <https://orcid.org/0000-0001-9438-6909>),
  Steffen Neumann [ctb] (ORCID: <https://orcid.org/0000-0002-7899-7192>),
  Carolin Huber [ctb] (ORCID: <https://orcid.org/0000-0002-9355-8948>),
  Roger Gine [ctb] (ORCID: <https://orcid.org/0000-0003-0288-9619>),
  Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>,
    fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded
    by the Autonomous Province of Bolzano under the Joint Projects
    South Tyrol–Germany 2025 program.)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>