Package: MsExperimentStash
Title: Save and restore MsExperiment objects in interoperable file
        formats
Version: 0.99.0
Authors@R: 
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Philippine", family = "Louail",
             email = "philippine.louail@outlook.com",
             role = "aut",
             comment = c(ORCID = "0009-0007-5429-6846")),
      person(given = "Laurent", family = "Gatto",
             email = "laurent.gatto@uclouvain.be",
             role = "ctb",
             comment = c(ORCID = "0000-0002-1520-2268")),
      person(given = "Gabriele", family = "Tomè",
             email = "gabriele.tome@eurac.edu",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-3976-6068",
             fnd = "MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.")))
Description: The serialization mechanism of R allows to save and load R
        data objects in a binary format, that can however not be read
        by other programming languages or software. The
        MsExperimentStash package implements the serialization methods
        from the MsStash package for MsExperiment objects. Data can be
        stashed in a variety of file formats and types, including HDF5
        and JSON-based formats defined by the Bioconductor *alabaster*
        package. The package provides also functionality to read a full
        MS experiment, including MS data and experimental metadata
        information, from the MetaboLights repository.
Depends: R (>= 4.5.0), MsStash
Imports: methods, alabaster.base, MsExperiment, S4Vectors, Spectra,
        MsCoreUtils, ProtGenerics
Suggests: BiocStyle, testthat, pkgload, callr, fs, alabaster.matrix,
        alabaster.se, SummarizedExperiment, SpectraStash, MsDataHub,
        QFeatures, mzR, knitr, MsBackendMetaboLights
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsExperimentStash/issues
URL: https://github.com/RforMassSpectrometry/MsExperimentStash
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport,
        Proteomics
Roxygen: list(markdown=TRUE)
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev libssl-dev libnode-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-10 11:30:57 UTC
RemoteUrl: https://github.com/BiocStaging/MsExperimentStash
RemoteRef: HEAD
RemoteSha: 33087fb968473a6bd71eb8c8fa0299001942900e
NeedsCompilation: no
Packaged: 2026-10-13 11:24:48 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Philippine Louail [aut] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>),
  Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>),
  Gabriele Tomè [ctb] (ORCID: <https://orcid.org/0000-0002-3976-6068>,
    fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded
    by the Autonomous Province of Bolzano under the Joint Projects
    South Tyrol–Germany 2025 program.)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>