Package: MultiOmicsCancer
Title: Integrative Multi-Omics Analysis for Pan-Cancer Research
Version: 0.99.2
Authors@R: person("Maryam", "Emami", , "Maryam.emami1499@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0009-0008-7710-3274"))
Description: A modular and cancer-agnostic framework for integrative
        analysis of multi-omics data in cancer research. The package
        provides tools for differential methylation analysis, gene
        expression analysis, miRNA profiling, multi-omics integration,
        survival analysis, and biomarker discovery. It supports data
        from TCGA, cBioPortal, GEO, and user-provided datasets, and is
        designed to work across any cancer type.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.5.0)
Imports: methods, MultiAssayExperiment, SummarizedExperiment, limma,
        DESeq2, survival, survminer, ggplot2, rlang, httr2, stats,
        utils, tidyestimate
Suggests: cBioPortalData, curatedTCGAData, testthat (>= 3.0.0), knitr,
        rmarkdown, BiocCheck, S4Vectors
biocViews: Epigenetics, DNAMethylation, GeneExpression,
        Transcriptomics, DifferentialExpression,
        DifferentialMethylation, MultipleComparison, Survival
URL: https://github.com/maryam6770/MultiOmicsCancer
BugReports: https://github.com/maryam6770/MultiOmicsCancer/issues
Config/testthat/edition: 3
Config/roxygen2/version: 8.1.0
VignetteBuilder: knitr
Config/pak/sysreqs: cmake make libicu-dev libjpeg-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-20 08:08:36 UTC
RemoteUrl: https://github.com/BiocStaging/MultiOmicsCancer
RemoteRef: HEAD
RemoteSha: 9cf1d79d0627a0a4add0ac3b52028803a83eafaa
NeedsCompilation: no
Packaged: 2026-10-20 10:24:07 UTC; root
Author: Maryam Emami [aut, cre] (ORCID:
    <https://orcid.org/0009-0008-7710-3274>)
Maintainer: Maryam Emami <Maryam.emami1499@gmail.com>