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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "OrnTx" in publications use:'
type: software
license: GPL-3.0-only
title: 'OrnTx: Expression Atlas for Ornamental Plant Transcriptomics'
version: 0.99.2
doi: 10.1101/2026.placeholder
identifiers:
- type: doi
  value: 10.32614/CRAN.package.OrnTx
abstract: The first R/Bioconductor package for ornamental plant transcriptomics. Provides
  a complete RNA-seq pipeline (download, QC, alignment, import), a curated Rosa chinensis
  expression atlas, a 64-gene floriculture trait database anchored to Arabidopsis
  orthologs, multi-tool import support (STAR, featureCounts, HTSeq, Salmon), auto-detection
  of three Rosa chinensis gene ID formats, and cross-species validation on Tagetes
  erecta.
authors:
- family-names: Meena
  given-names: Lashika
  email: lashikakarnal@gmail.com
  orcid: https://orcid.org/0009-0003-0770-0261
preferred-citation:
  type: article
  title: 'OrnTx: A Universal R/Bioconductor Package and Curated Multi-Study Expression
    Atlas for Ornamental and Floricultural Plant Transcriptomics'
  authors:
  - family-names: Meena
    given-names: Lashika
    email: lashikakarnal@gmail.com
    orcid: https://orcid.org/0009-0003-0770-0261
  journal: Plant Methods
  year: '2026'
  notes: Manuscript in preparation
  doi: 10.1101/2026.placeholder
  url: https://github.com/lashikakarnal/OrnTx
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/lashikakarnal/OrnTx
commit: 34ba0effa903e6d2d931389fe5156caa4aeab942
url: https://github.com/lashikakarnal/OrnTx
date-released: '2026-10-15'
contact:
- family-names: Meena
  given-names: Lashika
  email: lashikakarnal@gmail.com
  orcid: https://orcid.org/0009-0003-0770-0261