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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PhiSpace" in publications use:'
type: software
license: AGPL-3.0-only
title: 'PhiSpace: Continuous cell state annotation for single-cell and spatial omics
  data'
version: 0.99.0
doi: 10.1186/s13059-025-03755-8
abstract: Continuous phenotyping of bulk, single-cell and spatial omics data using
  partial least squares regression. The methods are described in Mao et al. (2025)
  <https://doi.org/10.1186/s13059-025-03755-8> and Mao et al. (2026) <https://doi.org/10.1016/j.crmeth.2026.101483>.
authors:
- family-names: Mao
  given-names: Jiadong
  email: chiatungmao@gmail.com
  orcid: https://orcid.org/0000-0002-3818-1981
preferred-citation:
  type: article
  title: 'Φ-Space: continuous phenotyping of single-cell multi-omics data'
  authors:
  - family-names: Mao
    given-names: Jiadong
    email: chiatungmao@gmail.com
    orcid: https://orcid.org/0000-0002-3818-1981
  - family-names: Deng
    given-names: Yidi
  - family-names: Lê Cao
    given-names: Kim-Anh
  journal: Genome Biology
  year: '2025'
  volume: '26'
  doi: 10.1186/s13059-025-03755-8
  start: '323'
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/mao-lab-org/PhiSpace
commit: 684adb8ae077922f2406cbee6a43ffe17908e3a2
url: https://mao-lab-org.github.io/PhiSpace/
date-released: '2026-10-13'
contact:
- family-names: Mao
  given-names: Jiadong
  email: chiatungmao@gmail.com
  orcid: https://orcid.org/0000-0002-3818-1981
references:
- type: article
  title: 'Φ-Space ST: a platform-agnostic method to identify cell states in spatial
    transcriptomics studies'
  authors:
  - family-names: Mao
    given-names: Jiadong
  - family-names: Choi
    given-names: Jarny
  - family-names: Lê Cao
    given-names: Kim-Anh
  journal: Cell Reports Methods
  year: '2026'
  volume: '6'
  issue: '8'
  doi: 10.1016/j.crmeth.2026.101483
  start: '101483'