This R package is based on the Pscan web platform described in the following publication Zambelli F, Pesole G, Pavesi G (2009). “Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.” _Nucleic Acids Research_, *37*, W247-W252. doi:10.1093/nar/gkp464 . A BibTeX entry for LaTeX users is @Article{, title = {Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.}, author = {Federico Zambelli and Graziano Pesole and Giulio Pavesi}, journal = {Nucleic Acids Research}, year = {2009}, volume = {37}, pages = {W247-W252}, doi = {10.1093/nar/gkp464}, }