Package: PscanRBackgrounds
Type: Package
Title: Precomputed Promoter Backgrounds for PscanR
Version: 0.99.3
Authors@R: c(
    person("Federico", "Zambelli",
        email = "federico.zambelli@unimi.it",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0003-3487-4331")),
    person("Diana", "Betelli", role = "aut",
        comment = c(ORCID = "0009-0007-6207-7715")),
    person("Giulio", "Pavesi", role = "aut",
        comment = c(ORCID = "0000-0001-5705-6249"))
    )
Description: Provides ExperimentHub metadata and documentation for the
        promoter-background score distributions used by PscanR
        transcription factor binding motif enrichment analyses. Each of
        the 105 backgrounds is a separate ExperimentHub resource,
        covering the JASPAR 2020, 2022 and 2024 CORE collections, seven
        genome assemblies of five organisms, and five promoter windows.
        The files are hosted on Zenodo, one record per JASPAR release,
        and archived together in a version-specific Zenodo record.
License: CC BY 4.0
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: ExperimentHub
Suggests: BiocStyle, ExperimentHubData, knitr, rmarkdown, testthat (>=
        3.0.0)
biocViews: ExperimentHub, Genome, Homo_sapiens_Data, Mus_musculus_Data,
        Drosophila_melanogaster_Data, Saccharomyces_cerevisiae_Data,
        Arabidopsis_thaliana_Data
VignetteBuilder: knitr
URL: https://github.com/Federico77z/PscanRBackgrounds,
        https://doi.org/10.5281/zenodo.21821764
BugReports: https://github.com/Federico77z/PscanRBackgrounds/issues
RoxygenNote: 8.0.0
Config/testthat/edition: 3
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-06 09:27:42 UTC
RemoteUrl: https://github.com/BiocStaging/PscanRBackgrounds
RemoteRef: HEAD
RemoteSha: 7c2a404c2f16c5eb203d8589bf0d91e6e5b1eacc
NeedsCompilation: no
Packaged: 2026-10-07 08:25:32 UTC; root
Author: Federico Zambelli [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3487-4331>),
  Diana Betelli [aut] (ORCID: <https://orcid.org/0009-0007-6207-7715>),
  Giulio Pavesi [aut] (ORCID: <https://orcid.org/0000-0001-5705-6249>)
Maintainer: Federico Zambelli <federico.zambelli@unimi.it>