# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "PscanRBackgrounds" in publications use:'
type: software
license: CC-BY-4.0
title: 'PscanRBackgrounds: Precomputed Promoter Backgrounds for PscanR'
version: 0.99.3
doi: 10.5281/zenodo.21821764
identifiers:
- type: doi
  value: 10.32614/CRAN.package.PscanRBackgrounds
abstract: Provides ExperimentHub metadata and documentation for the promoter-background
  score distributions used by PscanR transcription factor binding motif enrichment
  analyses. Each of the 105 backgrounds is a separate ExperimentHub resource, covering
  the JASPAR 2020, 2022 and 2024 CORE collections, seven genome assemblies of five
  organisms, and five promoter windows. The files are hosted on Zenodo, one record
  per JASPAR release, and archived together in a version-specific Zenodo record.
authors:
- family-names: Zambelli
  given-names: Federico
  email: federico.zambelli@unimi.it
  orcid: https://orcid.org/0000-0003-3487-4331
- family-names: Betelli
  given-names: Diana
  orcid: https://orcid.org/0009-0007-6207-7715
- family-names: Pavesi
  given-names: Giulio
  orcid: https://orcid.org/0000-0001-5705-6249
preferred-citation:
  type: generic
  title: PscanR precomputed promoter backgrounds, version 2
  authors:
  - family-names: Zambelli
    given-names: Federico
    email: federico.zambelli@unimi.it
    orcid: https://orcid.org/0000-0003-3487-4331
  - family-names: Betelli
    given-names: Diana
    orcid: https://orcid.org/0009-0007-6207-7715
  - family-names: Pavesi
    given-names: Giulio
    orcid: https://orcid.org/0000-0001-5705-6249
  year: '2026'
  doi: 10.5281/zenodo.21821764
  url: https://doi.org/10.5281/zenodo.21821764
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/Federico77z/PscanRBackgrounds
commit: 7c2a404c2f16c5eb203d8589bf0d91e6e5b1eacc
url: https://doi.org/10.5281/zenodo.21821764
date-released: '2026-10-06'
contact:
- family-names: Zambelli
  given-names: Federico
  email: federico.zambelli@unimi.it
  orcid: https://orcid.org/0000-0003-3487-4331