Package: QuickBLAST
Type: Package
Title: High-Performance Sequence Alignment using BLAST and Apache Arrow
Version: 1.99.8
Date: 2026-07-21
Authors@R: person(given = "Vishvesh Karthik",
                    family = "",
                    role = c("aut", "cre", "cph"),
                    email = "vishveshkarthik@gmail.com",
                    comment=c(ORCID="0009-0008-0725-4253"))
Maintainer: Vishvesh Karthik <vishveshkarthik@gmail.com>
Description: A BLAST Wrapper to call BLAST directly from R
        (interoperable and without Sys.call()) coupled with Apache
        Arrow's columnar format with parquet, IPC and csv file support.
License: GPL (>= 2)
Depends: R (>= 4.4.0)
Imports: Rcpp (>= 1.0.10), RcppProgress (>= 0.4.2), dplyr (>= 1.1.4),
        tidyr (>= 1.3.1), tzdb (>= 0.5.0), iterators (>= 1.0.14), arrow
        (>= 21.0.0.1), tools (>= 4.3.1), compiler (>= 4.5.2), parallel
        (>= 4.4.1), fs (>= 1.6.6), RcppThread (>= 2.3.0), future (>=
        1.69.0), future.apply (>= 1.20.2), future.callr (>= 0.10.2),
        xfun (>= 0.56), BH (>= 1.90.0), magrittr (>= 2.0.5)
LinkingTo: Rcpp, RcppProgress, RcppThread, BH
biocViews: Software, Alignment, SequenceMatching, Sequencing,
        DataImport
Encoding: UTF-8
StagedInstall: no
UseLTO: yes
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Language: en-US
Suggests: curl (>= 7.0.0), formatR (>= 1.14), knitr, rmarkdown, remotes
VignetteBuilder: knitr
Collate: 'QuickBLAST-package.R' 'RcppExports.R' 'QuickBLAST.R'
SystemRequirements: cmake (>= 3.25), sqlite3 (deb: libsqlite3-dev, rpm:
        sqlite-devel), eigen (deb: libeigen3-dev, rpm: eigen3-devel),
        boost (deb: libboost-dev, rpm: boost-devel), fontconfig,
        libcurl, harfbuzz, fribidi, freetype2, libpng, libtiff,
        libjpeg, libuv (brew: libuv, deb: libuv1-dev, rpm:
        libuv-devel), nghttp2 (brew: nghttp2, deb: libnghttp2-dev, rpm:
        libnghttp2-devel), libunwind-dev (deb), libcurl4-openssl-dev
        (deb), pkg-config
URL: https://github.com/vizkidd/QuickBLAST
BugReports: https://github.com/vizkidd/QuickBLAST/issues
Config/pak/sysreqs: libboost-all-dev cmake libeigen3-dev
        libfontconfig1-dev libfreetype6-dev libfribidi-dev make
        libharfbuzz-dev libicu-dev libjpeg-dev libpng-dev libtiff-dev
        libuv1-dev libssl-dev pkg-config libsqlite3-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-21 17:46:06 UTC
RemoteUrl: https://github.com/BiocStaging/QuickBLAST
RemoteRef: HEAD
RemoteSha: 4efe6de52220eb5488add8d54e8c1f89e0b8b9ed
NeedsCompilation: yes
Packaged: 2026-07-21 18:42:47 UTC; root
Author: Vishvesh Karthik [aut, cre, cph] (ORCID:
    <https://orcid.org/0009-0008-0725-4253>)