Package: SACAT
Type: Package
Title: Structural-Absence and Conditional-Abundance Testing
Version: 0.99.2
Authors@R: 
    person("Yiqian", "Zhang", email = "zhang.16383@osu.edu",
           role = c("aut", "cre"),
           comment = c(ORCID = "0009-0004-0296-912X"))
URL: https://github.com/Statwright/SACAT
BugReports: https://github.com/Statwright/SACAT/issues
Description: Provides depth-aware taxon-level inference for microbiome
        count data. SACAT separates group differences in
        structural-absence probability from differences in mean log
        relative abundance among samples in which a taxon is present.
        It accounts for finite-depth nondetection, centers abundance
        effects against a target-excluded cross-taxon reference,
        reports component-specific and omnibus tests, and visualizes
        statistical evidence, observed detection, estimated zero
        sources, and abundance distributions.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: graphics, grDevices, grid, parallel, Rcpp,
        SummarizedExperiment, statmod, stats, utils
LinkingTo: Rcpp
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.2.0)
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
NeedsCompilation: yes
Config/roxygen2/version: 8.1.0
VignetteBuilder: knitr
biocViews: Microbiome, Metagenomics, DifferentialExpression,
        Regression, StatisticalMethod, Visualization
Config/pak/sysreqs: zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-11-15 01:57:01 UTC
RemoteUrl: https://github.com/BiocStaging/SACAT
RemoteRef: HEAD
RemoteSha: 976eedb31c5fdb2076153d9bbcdb765cf59baae9
Packaged: 2026-11-15 02:12:47 UTC; root
Author: Yiqian Zhang [aut, cre] (ORCID:
    <https://orcid.org/0009-0004-0296-912X>)
Maintainer: Yiqian Zhang <zhang.16383@osu.edu>