Package: STRprofilerR
Title: Compare Short Tandem Repeat Profiles for Model Authentication
Version: 0.99.1
Authors@R: 
    person("Jared", "Andrews", email = "jared.andrews07@gmail.com",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0002-0780-6248"))
Description: Compares short tandem repeat (STR) profiles to
        authenticate biomedical models such as cell lines and
        xenografts against the primary tissue samples they were derived
        from. Provides the Tanabe (Sorenson-Dice), Masters (versus
        query), and Masters (versus reference) similarity scores,
        heuristics for detecting sample mixing, flexible ingest of wide
        and long profile formats, comparison against user-supplied
        reference databases, and querying of the Cellosaurus knowledge
        base through the CLASTR REST API. A command line application is
        included for use in automated workflows, and a Shiny
        application for interactive queries.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/j-andrews7/STRprofilerR
BugReports: https://github.com/j-andrews7/STRprofilerR/issues
biocViews: Software, QualityControl, Genetics, CellBasedAssays
Depends: R (>= 4.5.0)
Imports: httr2, IRanges, Matrix, methods, S4Vectors, stats, tools,
        utils
Suggests: BiocStyle, bslib (>= 0.7.0), curl, DT, htmlwidgets, jsonlite,
        knitr, Rapp, readxl, rmarkdown, shiny (>= 1.8.1),
        SummarizedExperiment, testthat (>= 3.0.0), withr, writexl
VignetteBuilder: knitr
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libssl-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-13 19:01:19 UTC
RemoteUrl: https://github.com/BiocStaging/STRprofilerR
RemoteRef: HEAD
RemoteSha: fa9daea6b9345f4b25549c31fc8ec0e3c28eb8f7
NeedsCompilation: no
Packaged: 2026-10-13 19:33:49 UTC; root
Author: Jared Andrews [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0780-6248>)
Maintainer: Jared Andrews <jared.andrews07@gmail.com>