Package: SegStability
Type: Package
Title: Descriptive Segmentation Sensitivity in Spatial Transcriptomics
Version: 0.99.0
Authors@R: person("Rama Krishna", "Pudota",
    email = "ramakrishnapudota36@gmail.com", role = c("aut", "cre"),
    comment = c(ORCID = "0009-0009-2804-8915"))
Description: Quantifies correspondence between alternative cell
        segmentations of the same molecule-resolved spatial
        transcriptomics experiment. Preserves an immutable molecule
        universe, exact molecule identities, complete cell censuses,
        and explicit assignment statuses when constructing weighted
        shared-molecule graphs. Describes categorical cell-state
        stability, directional support sensitivity, optional spatial
        topology and polygon overlap, and agreement among stochastic
        segmentation runs. Results describe sensitivity to segmentation
        choices and do not estimate segmentation accuracy or establish
        biological ground truth.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.5.0)
biocViews: Spatial, Transcriptomics, SingleCell, DataRepresentation
Imports: methods, S4Vectors, digest
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, bit64, sf,
        MoleculeExperiment, SpatialFeatureExperiment
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/ramakrishna-p21/SegStability
BugReports: https://github.com/ramakrishna-p21/SegStability/issues
Config/roxygen2/version: 8.1.0
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-10-19 22:55:25 UTC
RemoteUrl: https://github.com/BiocStaging/SegStability
RemoteRef: HEAD
RemoteSha: 0f5a1bad6deba6addf4e7d341330d23252ad1d5a
NeedsCompilation: no
Packaged: 2026-10-20 00:00:34 UTC; root
Author: Rama Krishna Pudota [aut, cre] (ORCID:
    <https://orcid.org/0009-0009-2804-8915>)
Maintainer: Rama Krishna Pudota <ramakrishnapudota36@gmail.com>