NEWS
SimiCviz 0.99.0 (2026-04-24)
New package release!
- Initial public release of SimiCviz.
- Includes the S4 containers:
- SimiCvizExperiment for coordinated GRN weights, activity scores, labels, and metadata.
- AUCProcessor for activity-score computation workflows.
- Includes import utilities for:
- SimiCPipeline outputs.
- Generic CSV-based GRN and AUC inputs.
- Optional Python-backed pickle/h5ad reading via reticulate interoperability.
- Includes activity-score functionalities:
- TF activity score calculation from expression and weights.
- Dissimilarity score calculation.
- Includes visualization functions for:
- TF-target weight barplots.
- TF network heatmaps.
- AUC distributions, cumulative curves, and summary statistics.
- Dissimilarity heatmaps across labels/cell groups.
- Adjusted R2 distribution plots.
Interoperability
- Python-based pickle/h5ad reading is optional.
- Interoperability support is included for workflows that commonly use SimiCPipeline python outputs.
- Outputs from alternative algorithms for gene regulatory network are also compativle in standard csv format input.