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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SpaMTP" in publications use:'
type: software
license: MIT
title: 'SpaMTP: Spatial Metabolomics and Multi-Omics Analysis'
version: 0.99.10
doi: 10.1038/s41592-026-03140-8
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SpaMTP
- type: url
  value: https://genomicsmachinelearning.github.io/SpaMTP/
- type: url
  value: https://doi.org/10.1038/s41592-026-03140-8
abstract: Provides analysis, annotation, visualisation, and multi-omic integration
  methods for spatial metabolomics data. SpaMTP interoperates with Cardinal and SpatialExperiment
  containers, with optional Seurat conversion; supports indexed accurate-mass annotation
  using versioned RaMP resources; and implements spatial feature analysis, pathway
  enrichment, pathway-network visualisation, and alignment with spatial transcriptomics
  data.
authors:
- family-names: Causer
  given-names: Andrew
  email: a.causer@uq.edu.au
  orcid: https://orcid.org/0009-0001-7341-8366
- family-names: Lu
  given-names: Tianyao
  email: lu.t@wehi.edu.au
- family-names: Fitzgerald
  given-names: Christopher C.J.
  email: cfitzgerald@marum.de
  orcid: https://orcid.org/0000-0003-3935-4300
preferred-citation:
  type: article
  title: 'SpaMTP: integrative statistical analysis and visualization of spatial metabolomics
    and transcriptomics data'
  authors:
  - family-names: Causer
    given-names: Andrew
    email: a.causer@uq.edu.au
    orcid: https://orcid.org/0009-0001-7341-8366
  - family-names: Lu
    given-names: Tianyao
    email: lu.t@wehi.edu.au
  - family-names: Kriel
    given-names: Jurgen
  - family-names: Moffet
    given-names: Joel J. D.
  - family-names: Fitzgerald
    given-names: Christopher C. J.
  - family-names: Newman
    given-names: Andrew
  - family-names: Vu
    given-names: Hani
  - family-names: Tan
    given-names: Xiao
  - family-names: Vo
    given-names: Tuan
  - family-names: Cui
    given-names: Cedric
  - family-names: Narayana
    given-names: Vinod K.
  - family-names: Whittle
    given-names: James R.
  - family-names: Best
    given-names: Sarah A.
  - family-names: Freytag
    given-names: Saskia
  - family-names: Nguyen
    given-names: Quan
  journal: Nature Methods
  year: '2026'
  volume: '23'
  issue: '8'
  doi: 10.1038/s41592-026-03140-8
  url: https://doi.org/10.1038/s41592-026-03140-8
  start: '1501'
  end: '1506'
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/SpaMTP-project/SpaMTP
commit: 2c54b7bdefaec3fd714d185655bedeac56ba133a
url: https://github.com/GenomicsMachineLearning/SpaMTP
date-released: '2026-09-25'
contact:
- family-names: Lu
  given-names: Tianyao
  email: lu.t@wehi.edu.au