Package: SpaMTPdb
Type: Package
Title: Versioned Annotation Resources for SpaMTP
Version: 0.99.4
Date: 2026-09-13
Authors@R: c(
    person("Tianyao", "Lu",
           email = "lu.t@wehi.edu.au",
           role = c("aut", "cre")),
    person("Andrew", "Causer", role = "aut"),
    person("Quan", "Nguyen", role = "aut")
    )
Description: Provides lightweight, version-aware access to the
        annotation resources used by SpaMTP. Resources include pruned
        RaMP chemical, identifier, pathway, and pathway-topology
        tables, precomputed SMILES functional-group and ionisation
        features, and legacy metabolite reference tables, plus a
        separately versioned human gene identifier reference from fixed
        HGNC archives. RaMP resource files are hosted on Zenodo and
        described by AnnotationHub metadata rather than bundled in the
        package. Retrieved files are verified against recorded sizes
        and checksums and cached for reuse, and a local resource
        directory can be used for development and reproducible database
        builds. Maintainer recipes coordinate a shared Zenodo resource
        collection with SpaMTPData while preserving separate annotation
        and experiment registries and independent resource versions.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: AnnotationHub, S4Vectors, utils
Suggests: AnnotationHubData, BiocStyle, httr2, jsonlite, knitr,
        rmarkdown, testthat (>= 3.0.0)
biocViews: AnnotationData, AnnotationHub
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
URL: https://github.com/BCRL-tylu/SpaMTPdb
BugReports: https://github.com/BCRL-tylu/SpaMTPdb/issues
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-09-13 11:34:49 UTC
RemoteUrl: https://github.com/BiocStaging/SpaMTPdb
RemoteRef: HEAD
RemoteSha: a004d18957c081ea11e1f38aaea52f2ebd09d4c2
NeedsCompilation: no
Packaged: 2026-09-24 05:10:28 UTC; root
Author: Tianyao Lu [aut, cre],
  Andrew Causer [aut],
  Quan Nguyen [aut]
Maintainer: Tianyao Lu <lu.t@wehi.edu.au>