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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Tweedieverse" in publications use:'
type: software
license: MIT
title: 'Tweedieverse: Differential Analysis of Omics Data Based on the Tweedie Distribution'
version: 0.99.0
doi: 10.1002/sim.9430
abstract: A toolkit for differential analysis of omics data. Implements a CPLM-based
  statistical workflow built on the Tweedie distribution. Unlike traditional single-omics
  tools, Tweedieverse is technology-agnostic and can be applied to both count and
  continuous measurements arising from diverse high-throughput technologies (e.g.
  transcript abundances from bulk and single-cell RNA-Seq studies in the form of UMI
  counts or non-UMI counts, microbiome taxonomic and functional profiles in the form
  of counts or relative abundances, and compound abundance levels or peak intensities
  from metabolomics and other mass spectrometry-based experiments, among others).
  The software includes multiple customization options such as the inclusion of random
  effects and multiple covariates along with several data exploration capabilities
  and visualization modules in a unified estimation umbrella.
authors:
- family-names: Arora
  given-names: Nalin
  email: naa4050@med.cornell.edu
  orcid: https://orcid.org/0009-0009-1340-688X
- family-names: Rahnavard
  given-names: Ali
  email: gholamali.rahnavard@gmail.com
  orcid: https://orcid.org/0000-0002-9710-0248
- family-names: Mallick
  given-names: Himel
  email: him4004@med.cornell.edu
  orcid: https://orcid.org/0000-0003-4956-2429
preferred-citation:
  type: article
  title: Differential expression of single-cell RNA-seq data using Tweedie models
  authors:
  - family-names: Mallick
    given-names: Himel
    email: him4004@med.cornell.edu
    orcid: https://orcid.org/0000-0003-4956-2429
  - family-names: Chatterjee
    given-names: Sayantan
  - family-names: Chowdhury
    given-names: Subhajit
  - family-names: Chatterjee
    given-names: Sayan
  - family-names: Rahnavard
    given-names: Ali
    email: gholamali.rahnavard@gmail.com
    orcid: https://orcid.org/0000-0002-9710-0248
  - family-names: Hicks
    given-names: Stephanie C.
  journal: Statistics in Medicine
  year: '2022'
  volume: '41'
  issue: '18'
  doi: 10.1002/sim.9430
  start: 3492-3510
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/himelmallick/Tweedieverse
commit: a7e3890c120c8e4b166e1c558f9066798620335c
url: https://github.com/himelmallick/Tweedieverse
date-released: '2026-05-07'
contact:
- family-names: Arora
  given-names: Nalin
  email: naa4050@med.cornell.edu
  orcid: https://orcid.org/0009-0009-1340-688X