Package: apbCatalogR
Title: Look Up APB Result Fields by Meaning
Version: 0.99.0
Authors@R: c(
    person("Witold E.", "Wolski", , "witold.wolski@fgcz.uzh.ch", role = "aut",
           comment = c(ORCID = "0000-0002-6468-120X")),
    person("Witek", "Wolski", , "wewolski@gmail.com", role = "cre"))
Description: Looks up the fields of AnnData Proteomics Bridge (APB)
        results by meaning, such as a PEP or an unnormalized intensity,
        without naming vendor columns. Reimplements the apb-catalog API
        on the bundle apb-catalog releases: reviewed catalogues, apb2's
        rule levels and expected answers. Reads APB results, as h5ad,
        Parquet or DuckDB, into anndataR objects.
License: MIT + file LICENSE
URL: https://anndata-omics-bridge.github.io/apbCatalogR/,
        https://github.com/anndata-omics-bridge/apbCatalogR
BugReports: https://github.com/anndata-omics-bridge/apbCatalogR/issues
biocViews: Proteomics, MassSpectrometry, DataImport, Infrastructure
Depends: R (>= 4.5.0)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Suggests: altdoc, arrow, BiocStyle, covr, cyclocomp, DBI, devtools,
        duckdb, knitr, lintr, rcmdcheck, rmarkdown, roxygen2, testthat
        (>= 3.0.0), withr
Config/testthat/edition: 3
VignetteBuilder: knitr
Imports: anndataR (>= 1.2.2), jsonlite, Matrix, R6, stats, tools, utils
Config/roxygen2/version: 8.1.1
Config/pak/sysreqs: libpng-dev python3
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-11-03 19:10:46 UTC
RemoteUrl: https://github.com/BiocStaging/apbCatalogR
RemoteRef: HEAD
RemoteSha: f015f97f567dbf228a46c9e5191278b79e11d511
NeedsCompilation: no
Packaged: 2026-11-03 19:50:16 UTC; root
Author: Witold E. Wolski [aut] (ORCID: <https://orcid.org/0000-0002-6468-120X>),
  Witek Wolski [cre]
Maintainer: Witek Wolski <wewolski@gmail.com>