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  "_topics": [
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    "pathways",
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    "differentialexpression",
    "cellbiology"
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    "plot_death_compare_heatmap",
    "plot_death_enrich_bubble",
    "plot_death_enrich_network",
    "plot_death_enrich_targeted",
    "plot_death_gsea_curve",
    "plot_death_gsea_curve_multiple",
    "plot_death_gsea_heatmap_multiple",
    "plot_death_gsea_ranked",
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    "plot_death_ssgsea_boxplot",
    "plot_death_ssgsea_heatmap",
    "plot_death_volcano"
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        "gene"
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      "table": true,
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    },
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        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
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      "title": "Demonstration DEG List for Single-Group ORA",
      "object": "demo_deg",
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      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "demo_deg_list",
      "title": "Demonstration DEG Lists for Multi-Group ORA",
      "object": "demo_deg_list",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
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      "name": "demo_expr",
      "title": "Demonstration Expression Matrix for ssGSEA",
      "object": "demo_expr",
      "class": [
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        "array"
      ],
      "fields": [
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        "Sample2",
        "Sample3",
        "Sample4",
        "Sample5",
        "Sample6",
        "Sample7",
        "Sample8",
        "Sample9",
        "Sample10",
        "Sample11",
        "Sample12"
      ],
      "rows": 3486,
      "table": true,
      "tojson": true
    },
    {
      "name": "demo_group",
      "title": "Demonstration Sample Groups for ssGSEA",
      "object": "demo_group",
      "class": [
        "factor"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "demo_rank_apop",
      "title": "Demonstration Ranked Gene List for Single-Group GSEA",
      "object": "demo_rank_apop",
      "class": [
        "numeric"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "demo_rank_apop_list",
      "title": "Demonstration Ranked Gene Lists for Multi-Group GSEA",
      "object": "demo_rank_apop_list",
      "class": [
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      ],
      "fields": [],
      "table": true,
      "tojson": true
    },
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      "object": "demo_targeted_deg",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "representative_genes",
      "title": "Representative Gene Sets for Cell Death Types",
      "object": "representative_genes",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "representative_pathways",
      "title": "Representative Pathway Recommendation Metadata",
      "object": "representative_pathways",
      "class": [
        "data.frame"
      ],
      "fields": [
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        "PMID",
        "IF",
        "Cite",
        "Pathway",
        "Source",
        "Description",
        "Notes"
      ],
      "rows": 13,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "cd_Genesets",
      "title": "Curated Cell Death Pathway Gene Sets",
      "topics": [
        "cd_Genesets"
      ]
    },
    {
      "page": "CDEnrich_demo_data",
      "title": "CDEnrich Demonstration Data",
      "topics": [
        "CDEnrich_demo_data"
      ]
    },
    {
      "page": "CDEnrich-data",
      "title": "Curated Data Included in CDEnrich",
      "topics": [
        "CDEnrich-data"
      ]
    },
    {
      "page": "celldeath_compare_enrich",
      "title": "ORA Enrichment Analysis for Cell Death Pathways (Multi-Group Comparison)",
      "topics": [
        "celldeath_compare_enrich"
      ]
    },
    {
      "page": "celldeath_enrich",
      "title": "ORA Enrichment Analysis for Cell Death Pathways (Single Group)",
      "topics": [
        "celldeath_enrich"
      ]
    },
    {
      "page": "celldeath_gsea",
      "title": "Cell Death Pathway GSEA Analysis",
      "topics": [
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    },
    {
      "page": "celldeath_gsea_multiple",
      "title": "Multiple Group Cell Death Pathway GSEA Analysis",
      "topics": [
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      ]
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      "page": "celldeath_ssgsea",
      "title": "ssGSEA Analysis for Cell Death Pathways",
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      "title": "Differential Analysis of ssGSEA Scores Between Groups",
      "topics": [
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    {
      "page": "demo_all_genes",
      "title": "Demonstration Background Gene Universe",
      "topics": [
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    },
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      "page": "demo_deg",
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      "page": "demo_group",
      "title": "Demonstration Sample Groups for ssGSEA",
      "topics": [
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      ]
    },
    {
      "page": "demo_rank_apop",
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      "topics": [
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    },
    {
      "page": "demo_rank_apop_list",
      "title": "Demonstration Ranked Gene Lists for Multi-Group GSEA",
      "topics": [
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      ]
    },
    {
      "page": "demo_targeted_deg",
      "title": "Demonstration DEG List for Targeted ORA",
      "topics": [
        "demo_targeted_deg"
      ]
    },
    {
      "page": "get_representative_pathway",
      "title": "Get the Recommended Representative Gene Set for a Cell Death Type",
      "topics": [
        "get_representative_pathway"
      ]
    },
    {
      "page": "load_cell_death_genes",
      "title": "Load Curated Cell Death Gene Sets",
      "topics": [
        "load_cell_death_genes"
      ]
    },
    {
      "page": "plot_death_compare_bubble",
      "title": "Visualization of Multi-Group Cell Death Enrichment Comparison",
      "topics": [
        "plot_death_compare_bubble"
      ]
    },
    {
      "page": "plot_death_compare_heatmap",
      "title": "Visualization of Multi-Group Cell Death Enrichment Comparison (Heatmap)",
      "topics": [
        "plot_death_compare_heatmap"
      ]
    },
    {
      "page": "plot_death_enrich_bubble",
      "title": "Visualization of Cell Death Enrichment Results (Bubble Plot)",
      "topics": [
        "plot_death_enrich_bubble"
      ]
    },
    {
      "page": "plot_death_enrich_network",
      "title": "Visualization of Cell Death Enrichment Results (Enrichment Network)",
      "topics": [
        "plot_death_enrich_network"
      ]
    },
    {
      "page": "plot_death_enrich_targeted",
      "title": "Targeted Single-Pathway ORA Summary Plot",
      "topics": [
        "plot_death_enrich_targeted"
      ]
    },
    {
      "page": "plot_death_gsea_curve",
      "title": "Plot GSEA Curve for Cell Death Pathways",
      "topics": [
        "plot_death_gsea_curve"
      ]
    },
    {
      "page": "plot_death_gsea_curve_multiple",
      "title": "Plot GSEA Curves for Multiple Group Cell Death Pathways",
      "topics": [
        "plot_death_gsea_curve_multiple"
      ]
    },
    {
      "page": "plot_death_gsea_heatmap_multiple",
      "title": "Heatmap for Multi-Group GSEA Results",
      "topics": [
        "plot_death_gsea_heatmap_multiple"
      ]
    },
    {
      "page": "plot_death_gsea_ranked",
      "title": "Plot GSEA Ranking Score Curve for Cell Death Pathways",
      "topics": [
        "plot_death_gsea_ranked"
      ]
    },
    {
      "page": "plot_death_ssgsea_bar",
      "title": "Visualization of Cell Death ssGSEA Scores (Mean Barplot)",
      "topics": [
        "plot_death_ssgsea_bar"
      ]
    },
    {
      "page": "plot_death_ssgsea_boxplot",
      "title": "Visualization of Cell Death ssGSEA Scores (Grouped Boxplot)",
      "topics": [
        "plot_death_ssgsea_boxplot"
      ]
    },
    {
      "page": "plot_death_ssgsea_heatmap",
      "title": "Visualization of Cell Death ssGSEA Scores (Heatmap)",
      "topics": [
        "plot_death_ssgsea_heatmap"
      ]
    },
    {
      "page": "plot_death_volcano",
      "title": "Volcano Plot for Cell Death Enrichment Results",
      "topics": [
        "plot_death_volcano"
      ]
    },
    {
      "page": "print.celldeath_ssgsea",
      "title": "Print Method for celldeath_ssgsea Objects",
      "topics": [
        "print.celldeath_ssgsea"
      ]
    },
    {
      "page": "representative_genes",
      "title": "Representative Gene Sets for Cell Death Types",
      "topics": [
        "representative_genes"
      ]
    },
    {
      "page": "representative_pathways",
      "title": "Representative Pathway Recommendation Metadata",
      "topics": [
        "representative_pathways"
      ]
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