{ "_id": "6acbb8a6fe5cc25786e92d8f", "Package": "ECLIPSE", "Title": "ECLIPSE: Enhanced CLonotypic Inference via Prediction of\nSingle-cell Expression", "Version": "0.99.0", "Authors@R": "c(\nperson(\"Ethan\", \"Burns\", comment = c(ORCID = \"0009-0009-8061-3686\"), email = \"ethan.burns@yale.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Zhaochen\", \"Ye\", comment = c(ORCID = \"0009-0000-4422-3861\"), email = \"zhaochen.ye@yale.edu\", role = \"ctb\"),\nperson(\"Kelly\", \"Street\", comment = c(ORCID = \"0000-0001-6379-5013\"), email = \"kelly.street@gmail.com\", role = \"ctb\"),\nperson(\"David\", \"Braun\", comment = c(ORCID = \"0000-0003-4543-5553\"), email = \"david.braun@yale.edu\", role = c(\"aut\", \"fnd\")))", "Description": "This package is used for the analysis of single-cell T\ncell receptor sequencing data (scTCR-seq). ECLIPSE maps chain\npairings across a sample to predict the true clonotype of each\ncell, unlike other methods which only consider the chains that\nare sequenced in each cell. Seurat objects and Cell Ranger\nvdj/multi contig files are required as inputs.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "URL": "https://github.com/eburns10/ECLIPSE", "biocViews": "Software, GeneExpression, BiomedicalInformatics,\nImmunoOncology, Transcriptomics, Classification, SingleCell,\nAnnotation, Sequencing", "BugReports": "https://github.com/eburns10/ECLIPSE/issues", "Config/roxygen2/version": "8.0.0", "VignetteBuilder": "knitr", "RoxygenNote": "8.0.0", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibglpk-dev make libgsl0-dev libicu-dev libuv1-dev libxml2-dev\nlibssl-dev zlib1g-dev", "Repository": "https://biocstaging.r-universe.dev", "Date/Publication": "2026-08-11 16:21:03 UTC", "RemoteUrl": "https://github.com/BiocStaging/ECLIPSE", "RemoteRef": "HEAD", "RemoteSha": "7f479a65a103929141e892a777f36cd546141857", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-11 15:58:53 UTC", "User": "root" }, "Author": 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