{ "_id": "6a2843e0732311cd8758329e", "Package": "MetaPathNet", "Title": "KEGG-Based Metabolic and Signaling Network Analysis for Systems\nBiology", "Version": "0.99.1", "Authors@R": "c(\nperson(\n\"Zhaojie\", \"Wang\",\nemail = \"zhaojie.wang@cnrs.fr\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0009-7191-2107\")\n),\nperson(\"Francesc\", \"Puig-Castellvi\", role = \"aut\"),\nperson(\"Manyi\", \"Jia\", role = \"aut\"),\nperson(\"Marc-Emmanuel\", \"Dumas\", role = c(\"aut\", \"ths\"))\n)", "Description": "Provides tools to construct KEGG-based metabolic and\nsignaling networks as edge lists for single-organism or\ncross-species analyses. The package supports identifier\nmapping, shortest-path and topology analyses, community\ndetection, permutation testing, pathway over-representation\nanalysis, and node annotation for host-microbiome studies. It\nalso provides network visualisation in R and Cytoscape and\nsupports extension of KEGG-based networks through additional\nreaction resources and user-defined reactions.", "SystemRequirements": "Cytoscape (>= 3.9.0) for Cytoscape-based\nvisualisation functions", "biocViews": "Network, Pathways, KEGG, SystemsBiology, Classification,\nMicrobiome", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "VignetteBuilder": "knitr", "URL": "https://github.com/zhaojie-wang/MetaPathNet", "BugReports": "https://github.com/zhaojie-wang/MetaPathNet/issues", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibglpk-dev make libbz2-dev libicu-dev liblzma-dev libpng-dev\nlibuv1-dev libxml2-dev libssl-dev python3 xz-utils libzmq3-dev\nzlib1g-dev", "Repository": "https://biocstaging.r-universe.dev", "Date/Publication": "2026-06-09 15:35:00 UTC", "RemoteUrl": "https://github.com/BiocStaging/MetaPathNet", "RemoteRef": "HEAD", 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