{ "_id": "6aea3bc22e87f76f20ad165e", "Package": "R4AOP", "Title": "Access the AOP-Wiki Through Its REST API", "Version": "0.99.0", "Authors@R": "c(\nperson(\"Sidra\", \"Adil\", email = \"sidraadil009@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-3044-3561\")),\nperson(\"Egon\", \"Willighagen\", email = \"egon.willighagen@maastrichtuniversity.nl\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0001-7542-0286\")),\nperson(\"Tooba\", \"Abbassi-Daloii\", email = \"t.abbassidaloii@amsterdamumc.nl\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-4904-3269\")),\nperson(\"Marvin\", \"Martens\", email = \"marvin.martens@maastrichtuniversity.nl\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-2230-0840\"))\n)", "Description": "Provides functions to retrieve Adverse Outcome Pathways\n(AOPs), Key Events, Key Event Relationships, stressors,\nchemicals and genes from the AOP-Wiki through its REST API,\nwithout writing SPARQL queries. Each exported function\ncorresponds to one API endpoint, and results are returned as\ntibbles that fit directly into an R workflow. Pagination, input\nvalidation and session caching are handled internally, and\nevery result carries the version of the AOP-Wiki data it came\nfrom, so that analyses can be reported reproducibly.", "License": "MIT + file LICENSE", "URL": "https://github.com/SidraAdil/R4AOP", "BugReports": "https://github.com/SidraAdil/R4AOP/issues", "biocViews": "Software, ThirdPartyClient, Pathways, GeneSetEnrichment,\nAnnotation, DataImport", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/Needs/website": "rmarkdown", "Config/roxygen2/version": "8.1.1", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://biocstaging.r-universe.dev", "Date/Publication": "2026-11-03 13:52:34 UTC", "RemoteUrl": "https://github.com/BiocStaging/R4AOP", "RemoteRef": "HEAD", "RemoteSha": "ab2ef1687bec2adda6902ac43291e8cf52f0a481", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-03 19:49:40 UTC", "User": "root" }, "Author": "Sidra Adil [aut, cre] (ORCID: ),\nEgon Willighagen [ctb] (ORCID: ),\nTooba Abbassi-Daloii [ctb] (ORCID:\n),\nMarvin Martens [aut] (ORCID: )", "Maintainer": "Sidra Adil ", "_user": "biocstaging", "_type": "src", "_file": "R4AOP_0.99.0.tar.gz", "_fileid": "https://r2.ropensci.org/6aeb2c6b5811fe023e135a206e5b3894f0ce6241f1aa09638dfceb06f2b79749", "_filesize": 566710, "_sha256": "6aeb2c6b5811fe023e135a206e5b3894f0ce6241f1aa09638dfceb06f2b79749", "_expires": "2027-02-11T19:53:36.000Z", "_created": "2026-11-03T19:49:40.000Z", "_published": "2026-11-03T19:53:38.414Z", "_upstream": "https://github.com/BiocStaging/R4AOP", "_status": "success", "_maintainer": { "name": "Sidra Adil", "email": "sidraadil009@gmail.com", "login": "sidraadil", "description": "", "uuid": 42145503, "orcid": "0000-0002-3044-3561" }, "_jobs": [ { "job": 126164613200, "time": 195, "config": "bioc-checks", "r": "4.6.2", "check": "WARNING", "artifact": "13265584527" }, { "job": 126164613294, 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"ao_list" ] }, { "page": "aop_cache_clear", "title": "Clear the R4AOP response cache", "topics": [ "aop_cache_clear" ] }, { "page": "aop_chemicals", "title": "Chemicals of an AOP", "topics": [ "aop_chemicals" ] }, { "page": "aop_components", "title": "Key Event Components of every Key Event in an AOP", "topics": [ "aop_components" ] }, { "page": "aop_data_version", "title": "Data version of a result", "topics": [ "aop_data_version" ] }, { "page": "aop_dataset_info", "title": "Dataset information", "topics": [ "aop_dataset_info" ] }, { "page": "aop_gene_summary", "title": "Summarise the genes of an AOP per Key Event", "topics": [ "aop_gene_summary" ] }, { "page": "aop_genes", "title": "Genes linked to an AOP", "topics": [ "aop_genes" ] }, { "page": "aop_get", "title": "Get a single Adverse Outcome Pathway", "topics": [ "aop_get" ] }, { "page": "aop_kers", "title": "Key Event Relationships of an AOP", "topics": [ "aop_kers" ] }, { "page": "aop_key_events", "title": "Key Events of an AOP", "topics": [ "aop_key_events" ] }, { "page": "aop_list", "title": "List Adverse Outcome Pathways", "topics": [ "aop_list" ] }, { "page": "aop_methods", "title": "Measurement methods used in an AOP", "topics": [ "aop_methods" ] }, { "page": "aop_plot_components", "title": "Plot the Key Event Components of an AOP", "topics": [ "aop_plot_components" ] }, { "page": "aop_plot_genes", "title": "Plot the genes of an AOP per Key Event", "topics": [ "aop_plot_genes" ] }, { "page": "aop_search", "title": "Search across AOP-Wiki entities", "topics": [ "aop_search" ] }, { "page": "aop_stressors", "title": "Stressors of an AOP", "topics": [ "aop_stressors" ] }, { "page": "aop_summary", "title": "Overview of an AOP", "topics": [ "aop_summary" ] }, { "page": "chemical_aops", "title": "AOPs linked to a chemical", "topics": [ "chemical_aops" ] }, { "page": "chemical_get", "title": "Get a single chemical", "topics": [ "chemical_get" ] }, { "page": "chemical_key_events", "title": "Key Events linked to a chemical", "topics": [ "chemical_key_events" ] }, { "page": "chemical_list", "title": "List or search chemicals", "topics": [ "chemical_list" ] }, { "page": "chemical_pathways", "title": "WikiPathways containing a chemical", "topics": [ "chemical_pathways" ] }, { "page": "gene_get", "title": "Get a single gene", "topics": [ "gene_get" ] }, { "page": "gene_list", "title": "List genes", "topics": [ "gene_list" ] }, { "page": "ke_adverse_outcomes", "title": "Adverse Outcomes linked to a Key Event", "topics": [ "ke_adverse_outcomes" ] }, { "page": "ke_aops", "title": "AOPs containing a Key Event", "topics": [ "ke_aops" ] }, { "page": "ke_chemicals", "title": "Chemicals of a Key Event", "topics": [ "ke_chemicals" ] }, { "page": "ke_components", "title": "Key Event Components of a Key Event", "topics": [ "ke_components" ] }, { "page": "ke_downstream", "title": "Key Events downstream of a Key Event", "topics": [ "ke_downstream" ] }, { "page": "ke_gene_sets", "title": "Key Event gene sets 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