{
  "_id": "6a60da731fed6d528131b2d0",
  "Package": "SpectraStash",
  "Title": "Serialize and restore Spectra objects in interoperable file\nformats",
  "Version": "0.99.0",
  "Authors@R": "c(person(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Philippine\", family = \"Louail\",\nemail = \"philippine.louail@eurac.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0009-0007-5429-6846\")),\nperson(given = \"Laurent\", family = \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0002-1520-2268\")),\nperson(given = \"Gabriele\", family = \"Tomè\",\nemail = \"gabriele.tome@eurac.edu\",\nrole = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-3976-6068\",\nfnd = \"MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.\")))",
  "Description": "The serialization mechanism of R allows to save and load R\ndata objects in a binary format, that can however not be read\nby other programming languages or software. The SpectraStash\npackage implements the serialization methods from the MsStash\npackage for Spectra objects and its MsBackend classes. A\nvariety of different file formats and types, including HDF5 and\nJSON-based formats defined by the Bioconductor *alabaster*\npackage are supported. The file type can be defined and\nconfigured through a second argument `param` of the save/read\nmethods.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/RforMassSpectrometry/SpectraStash/issues",
  "URL": "https://github.com/RforMassSpectrometry/SpectraStash",
  "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, DataImport,\nProteomics",
  "Roxygen": "list(markdown=TRUE)",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev libnode-dev\nzlib1g-dev",
  "Repository": "https://biocstaging.r-universe.dev",
  "Date/Publication": "2026-07-22 13:43:41 UTC",
  "RemoteUrl": "https://github.com/BiocStaging/SpectraStash",
  "RemoteRef": "HEAD",
  "RemoteSha": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-22 14:46:39 UTC",
    "User": "root"
  },
  "Author": "Johannes Rainer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6977-7147>),\nPhilippine Louail [aut] (ORCID:\n<https://orcid.org/0009-0007-5429-6846>),\nLaurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>),\nGabriele Tomè [ctb] (ORCID: <https://orcid.org/0000-0002-3976-6068>,\nfnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded\nby the Autonomous Province of Bolzano under the Joint Projects\nSouth Tyrol–Germany 2025 program.)",
  "Maintainer": "Johannes Rainer <Johannes.Rainer@eurac.edu>",
  "_user": "biocstaging",
  "_type": "src",
  "_file": "SpectraStash_0.99.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/bc910cb132e3492e3a5e77a4a9452a4fd549fcc31445645f769f496340b420c3",
  "_filesize": 166501,
  "_sha256": "bc910cb132e3492e3a5e77a4a9452a4fd549fcc31445645f769f496340b420c3",
  "_expires": "2026-10-30T14:57:53.000Z",
  "_created": "2026-07-22T14:46:39.000Z",
  "_published": "2026-07-22T14:57:55.823Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 5
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860",
  "_status": "success",
  "_upstream": "https://github.com/BiocStaging/SpectraStash",
  "_commit": {
    "id": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
    "author": "Johannes Rainer <johannes.rainer@gmail.com>",
    "committer": "Johannes Rainer <johannes.rainer@gmail.com>",
    "message": "refactor: prepare for Bioconductor submission\n",
    "time": 1784727821
  },
  "_maintainer": {
    "name": "Johannes Rainer",
    "email": "johannes.rainer@eurac.edu",
    "login": "jorainer",
    "mastodon": "@jorainer@fediscience.org",
    "bluesky": "@jorainer.bsky.social",
    "linkedin": "in/jorainer",
    "orcid": "0000-0002-6977-7147",
    "description": "Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.",
    "uuid": 5506112
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 88957759389,
      "time": 173,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8533796373"
    },
    {
      "job": 88957759486,
      "time": 398,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8533924257"
    },
    {
      "job": 88957759457,
      "time": 390,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8533920295"
    },
    {
      "job": 88957759438,
      "time": 270,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8533872608"
    },
    {
      "job": 88957759421,
      "time": 307,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8533894836"
    },
    {
      "job": 88956475583,
      "time": 271,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8533697419"
    },
    {
      "job": 88957759454,
      "time": 181,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8533799736"
    },
    {
      "job": 88957759445,
      "time": 491,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8533975801"
    },
    {
      "job": 88957759417,
      "time": 630,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8534056984"
    },
    {
      "job": 88957759436,
      "time": 383,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8533916492"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "MsStash",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "Spectra",
      "version": ">= 1.23.2",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "alabaster.base",
      "role": "Imports"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "MsDataHub",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "mzR",
      "role": "Suggests"
    },
    {
      "package": "fs",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "pkgload",
      "role": "Suggests"
    },
    {
      "package": "callr",
      "role": "Suggests"
    }
  ],
  "_owner": "biocstaging",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-18",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 1
    },
    {
      "week": "2026-24",
      "n": 1
    },
    {
      "week": "2026-25",
      "n": 3
    },
    {
      "week": "2026-26",
      "n": 8
    },
    {
      "week": "2026-30",
      "n": 2
    }
  ],
  "_tags": [],
  "_topics": [
    "infrastructure",
    "massspectrometry",
    "metabolomics",
    "dataimport",
    "proteomics"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "jorainer",
      "count": 51,
      "uuid": 5506112
    }
  ],
  "_userbio": {
    "uuid": 278472782,
    "type": "organization",
    "name": "BiocStaging",
    "followers": 1
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SpectraStash"
  },
  "_devurl": "https://github.com/rformassspectrometry/spectrastash",
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SpectraStash.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "saveMsObject",
    "saveObject"
  ],
  "_help": [
    {
      "page": "MsBackendCachedStash",
      "title": "Stash for 'MsBackendCached'",
      "topics": [
        "MsBackendCachedStash",
        "readMsObject,MsBackendCached,AlabasterParam-method",
        "readMsObject,MsBackendCached,PlainTextParam-method",
        "saveMsObject,MsBackendCached,AlabasterParam-method",
        "saveMsObject,MsBackendCached,PlainTextParam-method",
        "saveObject,MsBackendCached-method"
      ]
    },
    {
      "page": "MsBackendHdf5PeaksStash",
      "title": "MsBackendHdf5Peaks Stash",
      "topics": [
        "MsBackendHdf5PeaksStash",
        "readMsObject,MsBackendHdf5Peaks,AlabasterParam-method",
        "readMsObject,MsBackendHdf5Peaks,PlainTextParam-method",
        "saveMsObject,MsBackendHdf5Peaks,AlabasterParam-method",
        "saveMsObject,MsBackendHdf5Peaks,PlainTextParam-method",
        "saveObject,MsBackendHdf5Peaks-method"
      ]
    },
    {
      "page": "MsBackendMemoryStash",
      "title": "Stash for 'MsBackendMemory' and 'MsBackendDataFrame'",
      "topics": [
        "MsBackendMemoryStash",
        "readMsObject,MsBackendInMemory,AlabasterParam-method",
        "readMsObject,MsBackendInMemory,PlainTextParam-method",
        "saveMsObject,MsBackendInMemory,AlabasterParam-method",
        "saveMsObject,MsBackendInMemory,PlainTextParam-method",
        "saveObject,MsBackendInMemory-method"
      ]
    },
    {
      "page": "MsBackendMzRStash",
      "title": "MsBackendMzR Stash",
      "topics": [
        "MsBackendMzRStash",
        "readMsObject,MsBackendMzR,AlabasterParam-method",
        "readMsObject,MsBackendMzR,PlainTextParam-method",
        "saveMsObject,MsBackendMzR,AlabasterParam-method",
        "saveMsObject,MsBackendMzR,PlainTextParam-method",
        "saveObject,MsBackendMzR-method"
      ]
    },
    {
      "page": "SpectraStash",
      "title": "Spectra Stash",
      "topics": [
        "readMsObject,Spectra,AlabasterParam-method",
        "readMsObject,Spectra,PlainTextParam-method",
        "saveMsObject,Spectra,AlabasterParam-method",
        "saveMsObject,Spectra,PlainTextParam-method",
        "saveObject,Spectra-method",
        "SpectraStash"
      ]
    }
  ],
  "_readme": "https://github.com/BiocStaging/SpectraStash/raw/HEAD/README.md",
  "_rundeps": [
    "alabaster.base",
    "alabaster.schemas",
    "assorthead",
    "BH",
    "BiocGenerics",
    "biocmake",
    "BiocParallel",
    "clue",
    "cluster",
    "codetools",
    "cpp11",
    "curl",
    "data.table",
    "dir.expiry",
    "filelock",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "IRanges",
    "jsonlite",
    "jsonvalidate",
    "lambda.r",
    "MASS",
    "MetaboCoreUtils",
    "MsCoreUtils",
    "MsStash",
    "ProtGenerics",
    "R6",
    "Rcpp",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "S4Vectors",
    "snow",
    "Spectra",
    "V8"
  ],
  "_vignettes": [
    {
      "source": "SpectraStash.Rmd",
      "filename": "SpectraStash.html",
      "title": "Savely Store MS Data Objects in a Portable Stash",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "A stash for Spectra objects",
        "Creating self-contained stashes",
        "Stashes for Spectra with in-memory backends",
        "Session information"
      ],
      "created": "2026-06-25 07:26:10",
      "modified": "2026-07-22 13:43:41",
      "commits": 2
    }
  ],
  "_score": 3.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "spectrastash",
  "_universes": [
    "biocstaging",
    "jorainer",
    "rformassspectrometry"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-07-22T14:49:37.000Z",
      "distro": "resolute",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/81d5bd23ef9ae3b8987cdc9b96f53e7ed6a251fa811c79295dd3ad27b03c5532",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.99.0",
      "date": "2026-07-22T14:49:31.000Z",
      "distro": "resolute",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/f6dbc04cff55869b4c9e78ff9659cc8cc3ead7db33a09fe71bdd2d9022601769",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-07-22T14:49:11.000Z",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/ed9a5589eed299a88d7fa0fead7e2bef356c637310fa7a496b78857250a174d4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.99.0",
      "date": "2026-07-22T14:49:09.000Z",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/09fcc712246bb4c2aeabe28cc9dcf76666057ae888cf0c5613c0f2161fc26360",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.0",
      "date": "2026-07-22T14:49:59.000Z",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/08b78e9e38ce30007c55f70bc5dd940fca3d8bc519a665bb0155dd89546b7551",
      "status": "success",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-07-22T14:49:11.000Z",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/b3e8d43f4e82492e6dbfc1746f49748655d2097298a72d4e17cb514c07eb427c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-07-22T14:48:25.000Z",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/fd5252b81540b54c36f7092c890537588517c5d61b334c1d2a6c4f34cfcedc3e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.99.0",
      "date": "2026-07-22T14:48:08.000Z",
      "commit": "17f43f21fbbc68082d5af4998a1c0c3b82e34be6",
      "fileid": "https://r2.ropensci.org/ab7593408e9cd998117a31e4e6ef7504310561e6da978db0298c92673cdc8361",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/biocstaging/actions/runs/29929853860"
    }
  ]
}