{ "_id": "6acb643ffe5cc25786e8f376", "Package": "bppg", "Title": "Bipartite peptide-protein graphs", "Version": "0.99.1", "Date": "2026-08-12", "Authors@R": "c(\nperson(\"Karin\", \"Schork\", , \"karin.schork@rub.de\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-3756-4347\")),\nperson(\"Julika\", \"Wenzel\", , \"julika.wenzel@rub.de\", role = c(\"aut\"),\ncomment = c(ORCID = \"0009-0004-1468-5984\")),\nperson(\"Katharina\", \"Neuhaus\", , \"katharina.neuhaus@rub.de\", role = c(\"aut\")),\nperson(\"Martin\", \"Eisenacher\", , \"martin.eisenacher@rub.de\", role = c(\"aut\", \"fnd\"),\ncomment = c(ORCID = \"0000-0003-2687-7444\")))", "Description": "This package contains functionality to create and\ncharacterize bipartite graphs that model the relationship\nbetween peptides and proteins in bottom-up proteomics. With\nthese graphs, protein ratios (fold change between two sample\ngroups) are calculated from the respective measured peptide\nratios. The main aim is to make use of quantitative information\ncontained in shared peptides and making it possible to quantify\nproteins without shared peptides. Further, the package offers\ngeneral analysis of peptide and protein relationships using\nbipartite graphs and visualization for these graphs.", "License": "BSD_3_clause + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "biocViews": "Proteomics, GraphAndNetwork, MassSpectrometry,\nMultipleComparison, Visualization", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Config/roxygen2/version": "8.1.0", "URL": "https://github.com/mpc-bioinformatics/bppg", "BugReports": "https://github.com/mpc-bioinformatics/bppg/issues", "Config/pak/sysreqs": "libfontconfig1-dev libfreetype6-dev libglpk-dev\nlibicu-dev libxml2-dev zlib1g-dev", "Repository": "https://biocstaging.r-universe.dev", "Date/Publication": "2026-08-12 12:14:48 UTC", "RemoteUrl": "https://github.com/BiocStaging/bppg", "RemoteRef": "HEAD", "RemoteSha": "e3f64d0f75108a1114b1ab00d2e1b34c0b657f81", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-11 10:05:25 UTC", "User": "root" }, "Author": "Karin Schork [aut, cre] (ORCID:\n),\nJulika Wenzel [aut] (ORCID: ),\nKatharina Neuhaus [aut],\nMartin Eisenacher [aut, fnd] (ORCID:\n)", "Maintainer": "Karin Schork ", "_user": "biocstaging", "_type": "src", "_file": "bppg_0.99.1.tar.gz", "_fileid": "https://r2.ropensci.org/20a47660f2a3e4baccaad8ba2a6de9301d18b3a8ba7439eb87363d824df1f1b0", "_filesize": 2541870, "_sha256": "20a47660f2a3e4baccaad8ba2a6de9301d18b3a8ba7439eb87363d824df1f1b0", "_expires": "2027-01-19T10:26:05.000Z", "_created": "2026-10-11T10:05:25.000Z", "_published": "2026-10-11T10:26:07.721Z", "_buildurl": "https://github.com/r-universe/biocstaging/actions/runs/38130375877", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 0, "note": 4 }, "_upstream": "https://github.com/BiocStaging/bppg", "_commit": { "id": "e3f64d0f75108a1114b1ab00d2e1b34c0b657f81", "author": "Karin Schork ", "committer": "GitHub ", "message": "Merge pull request #82 from mpc-bioinformatics/devel_Julika\n\nDevel julika", "time": 1786536888 }, "_maintainer": { "name": "Karin Schork", "email": "karin.schork@rub.de", "login": "karinschork", "description": "Statistician in the proteomics field", "uuid": 6604866, "orcid": "0000-0003-3756-4347" }, "_distro": "resolute", "_jobs": [ { "job": 114444350573, "time": 190, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "11699225414" }, { "job": 114444350529, "time": 263, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11698868084" }, { "job": 114444350512, "time": 336, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11699014515" }, { "job": 114444350546, "time": 214, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11699361612" }, { "job": 114444350560, "time": 268, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11699746122" }, { "job": 114443330537, "time": 331, "config": "source", "r": "4.6.1", "check": "OK", "artifact": 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