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  "Package": "epiwraps",
  "Type": "Package",
  "Title": "epiwraps: Wrappers for plotting and dealing with epigenomics\ndata",
  "Version": "0.99.120",
  "Date": "2026-06-11",
  "Authors@R": "c(\nperson(\"Pierre-Luc\", \"Germain\", email=\"pierre-luc.germain@hest.ethz.ch\",\nrole=c(\"cre\",\"aut\"), comment=c(ORCID=\"0000-0003-3418-4218\")))",
  "Description": "A set of wrappers to facilitate working with epigenomics\ndata. Includes in particular wrappers for producing multitrack\nsingle-regions plots, enrichment heatmaps, bigwig generation,\nnormalization, etc. The focus was put on a simple yet flexible\ninterface.",
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  "Repository": "https://biocstaging.r-universe.dev",
  "Date/Publication": "2026-06-12 07:21:06 UTC",
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  "Author": "Pierre-Luc Germain [cre, aut] (ORCID:\n<https://orcid.org/0000-0003-3418-4218>)",
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      "object": "exampleDNAme",
      "file": "exampleDNAme.RData",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
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      "name": "exampleESE",
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      "object": "exampleESE",
      "file": "exampleESE.RData",
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      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "geneBodies",
      "title": "Example DNAme data on some active gene bodies",
      "object": "exampleDNAme",
      "file": "exampleDNAme.RData",
      "class": [
        "GRanges"
      ],
      "fields": [],
      "table": false,
      "tojson": false
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  ],
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    {
      "page": "addAssayToESE",
      "title": "addAssayToESE",
      "topics": [
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    {
      "page": "annotateRegions",
      "title": "annotateRegions",
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    {
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      "title": "bam2bw: create a coverage bigwig file from an alignment bam file.",
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    },
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      "topics": [
        "bamChrChunkApply"
      ]
    },
    {
      "page": "breakStrings",
      "title": "breakStrings",
      "topics": [
        "breakStrings"
      ]
    },
    {
      "page": "callPeaks",
      "title": "callPeaks",
      "topics": [
        "callPeaks"
      ]
    },
    {
      "page": "clusterSignalMatrices",
      "title": "clusterSignalMatrices: clusters the regions of a (set of) signal matrices.",
      "topics": [
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      ]
    },
    {
      "page": "colOverlaps",
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      ]
    },
    {
      "page": "EnrichmentSE-class",
      "title": "EnrichmentSE class and constructor",
      "topics": [
        ".EnrichmentSE",
        "EnrichmentSE",
        "EnrichmentSE-class",
        "score,EnrichmentSE-method",
        "show,EnrichmentSE-method",
        "[,EnrichmentSE,ANY,ANY,ANY-method"
      ]
    },
    {
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      "title": "estimateFragSize",
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    },
    {
      "page": "exampleDNAme",
      "title": "Example DNAme data on some active gene bodies",
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        "geneBodies"
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    },
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        "exampleESE"
      ]
    },
    {
      "page": "exportNarrowPeaks",
      "title": "exportNarrowPeaks",
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    {
      "page": "formatGenomicDist",
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      "title": "getCovStats",
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      "title": "getEmpiricalFDR",
      "topics": [
        "getEmpiricalFDR"
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      "page": "getNormFactors",
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    {
      "page": "getSignalMatrices",
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