{ "_id": "6a103a91acfb0bcc41c9b3e1", "Package": "ontoProc2", "Date": "2026-03-16", "Title": "Ontology Facilities Based on INCAtools Semantic SQL", "Version": "0.99.20", "Authors@R": "c(person(\n\"Vincent\", \"Carey\", role = c(\"aut\", \"cre\"),\nemail = \"stvjc@channing.harvard.edu\",\ncomment = c(ORCID = \"0000-0003-4046-0063\")),\nperson(\"Anthropic-Claude\", \"Sonnet4.6\", role=\"eng\"),\nperson(\n\"NIH NHGRI 2U24HG004059-17\",\nrole = \"fnd\"\n)\n)", "Description": "This package provides ontology facilities based on\nINCAtools Semantic SQL. Tooling is provided to retrieve and\ncache SQLite databases representing curated ontologies.\nontologyIndex ontology_index instances can be produced.\nAnthropic's Claude was used in the development of S7 classes\nand methods and in the production of documentation.", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "biocViews": "Infrastructure, DataRepresentation, Pathways, SingleCell", "URL": "https://github.com/vjcitn/ontoProc2", "BugReports": "https://github.com/vjcitn/ontoProc2/issues", "Config/roxygen2/version": "8.0.0", "Roxygen": "list(markdown = TRUE)", "Config/pak/sysreqs": "libicu-dev libssl-dev zlib1g-dev", "Repository": "https://biocstaging.r-universe.dev", "Date/Publication": "2026-05-11 23:01:49 UTC", "RemoteUrl": "https://github.com/BiocStaging/ontoProc2", "RemoteRef": "HEAD", "RemoteSha": "afb9147c1cd4341a4f5ed2b76d32e4f688b3cf10", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-12 00:05:59 UTC", "User": "root" }, "Author": "Vincent 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"get_ancestors", "title": "Get all ancestors of a term via entailed edges", "topics": [ "get_ancestors" ] }, { "page": "get_ancestors_partonomy", "title": "Get ancestors traversing both is-a and part-of relationships", "topics": [ "get_ancestors_partonomy" ] }, { "page": "get_definition", "title": "Get the text definition for a term", "topics": [ "get_definition" ] }, { "page": "get_descendants", "title": "Get all descendants of a term via entailed edges", "topics": [ "get_descendants" ] }, { "page": "get_descendants_partonomy", "title": "Get descendants traversing both is-a and has-part relationships", "topics": [ "get_descendants_partonomy" ] }, { "page": "get_direct_edges", "title": "Get direct edges in the ontology graph for a term", "topics": [ "get_direct_edges" ] }, { "page": "get_direct_subclasses", "title": "Get direct subclasses of a term", "topics": [ "get_direct_subclasses" ] }, { "page": "get_direct_superclasses", "title": "Get direct superclasses of a term", "topics": [ 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