# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "bppg" in publications use:'
type: software
license: BSD-3-Clause
title: 'bppg: Bipartite peptide-protein graphs'
version: 0.99.1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.bppg
abstract: This package contains functionality to create and characterize bipartite
  graphs that model the relationship between peptides and proteins in bottom-up proteomics.
  With these graphs, protein ratios (fold change between two sample groups) are calculated
  from the respective measured peptide ratios. The main aim is to make use of quantitative
  information contained in shared peptides and making it possible to quantify proteins
  without shared peptides. Further, the package offers general analysis of peptide
  and protein relationships using bipartite graphs and visualization for these graphs.
authors:
- family-names: Schork
  given-names: Karin
  email: karin.schork@rub.de
  orcid: https://orcid.org/0000-0003-3756-4347
- family-names: Wenzel
  given-names: Julika
  email: julika.wenzel@rub.de
  orcid: https://orcid.org/0009-0004-1468-5984
- family-names: Neuhaus
  given-names: Katharina
  email: katharina.neuhaus@rub.de
- family-names: Eisenacher
  given-names: Martin
  email: martin.eisenacher@rub.de
  orcid: https://orcid.org/0000-0003-2687-7444
preferred-citation:
  type: manual
  title: 'bppg: Bipartite peptide-protein graphs'
  authors:
  - family-names: Schork
    given-names: Karin
    email: karin.schork@rub.de
    orcid: https://orcid.org/0000-0003-3756-4347
  - family-names: Wenzel
    given-names: Julika
    email: julika.wenzel@rub.de
    orcid: https://orcid.org/0009-0004-1468-5984
  - family-names: Neuhaus
    given-names: Katharina
    email: katharina.neuhaus@rub.de
  - family-names: Eisenacher
    given-names: Martin
    email: martin.eisenacher@rub.de
    orcid: https://orcid.org/0000-0003-2687-7444
  year: '2026'
  url: https://github.com/mpc-bioinformatics/bppg
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/mpc-bioinformatics/bppg
commit: e3f64d0f75108a1114b1ab00d2e1b34c0b657f81
url: https://github.com/mpc-bioinformatics/bppg
date-released: '2026-08-12'
contact:
- family-names: Schork
  given-names: Karin
  email: karin.schork@rub.de
  orcid: https://orcid.org/0000-0003-3756-4347
references:
- type: thesis
  title: Improvement of protein quantification for proteins with shared peptides by
    using bipartite peptide-protein graphs
  authors:
  - family-names: Schork
    given-names: Karin
  year: '2024'
  institution:
    name: TU Dortmund University
  doi: 10.17877/DE290R-25361
  thesis-type: PhD Thesis