Package: cellpaintr
Type: Package
Title: Perturbation Analysis for Cell Painting Data
Version: 0.99.0
Authors@R: c(
    person("Christof", "Seiler", 
    email = "christof.seiler@usz.ch", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0001-8802-3642")),
    person("Phatthamon", "Laphanuwat" , 
    email = "phatthamon.laphanuwat@usz.ch", 
    role = "ctb"),
    person("Caroline", "Ospelt" , 
    email = "caroline.ospelt@usz.ch", 
    role = "ctb"),
    person("European League Against Rheumatism", role = "fnd"),
    person("Swiss National Science Foundation", role = "fnd")
    )
Description: This package load cell painting data into R and preprocess
        feature to make them ready for machine learning. We use random
        forest to predict cell perturbations from CellProfiler
        features. We summarize the results in a volcano plot.
biocViews: SingleCell, Software, Classification, FeatureExtraction,
        Preprocessing, Visualization
License: LGPL-3
Encoding: UTF-8
Config/testthat/edition: 3
Imports: ggplot2, readr, stringr, dplyr, parsnip, ranger, yardstick,
        rsample, purrr, scrapper, tibble, tidyr, ggrepel
Depends: R (>= 4.5.0), SummarizedExperiment, SingleCellExperiment
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle, scater,
        rlang
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
URL: https://github.com/ChristofSeiler/cellpaintr,
        https://christofseiler.github.io/cellpaintr/
BugReports: https://github.com/ChristofSeiler/cellpaintr/issues
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-13 11:15:58 UTC
RemoteUrl: https://github.com/BiocStaging/cellpaintr
RemoteRef: HEAD
RemoteSha: d2de195709967236f2aea7d32a303f93c0a5cc9b
NeedsCompilation: no
Packaged: 2026-07-13 11:49:34 UTC; root
Author: Christof Seiler [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8802-3642>),
  Phatthamon Laphanuwat [ctb],
  Caroline Ospelt [ctb],
  European League Against Rheumatism [fnd],
  Swiss National Science Foundation [fnd]
Maintainer: Christof Seiler <christof.seiler@usz.ch>