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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cellpaintr" in publications use:'
type: software
license: LGPL-3.0-only
title: 'cellpaintr: Perturbation Analysis for Cell Painting Data'
version: 0.99.0
doi: 10.64898/2026.06.23.733987
abstract: This package load cell painting data into R and preprocess feature to make
  them ready for machine learning. We use random forest to predict cell perturbations
  from CellProfiler features. We summarize the results in a volcano plot.
authors:
- family-names: Seiler
  given-names: Christof
  email: christof.seiler@usz.ch
  orcid: https://orcid.org/0000-0001-8802-3642
preferred-citation:
  type: article
  title: Developing High Content Imaging Functional Panels to Characterize Synovial
    Fibroblasts in Rheumatoid Arthritis
  authors:
  - family-names: Laphanuwat
    given-names: Phatthamon
  - family-names: Ezen
    given-names: Ege
  - family-names: Seiler
    given-names: Christof
    email: christof.seiler@usz.ch
    orcid: https://orcid.org/0000-0001-8802-3642
  - family-names: Ospelt
    given-names: Caroline
  journal: bioRxiv
  year: '2026'
  doi: 10.64898/2026.06.23.733987
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/ChristofSeiler/cellpaintr
commit: d2de195709967236f2aea7d32a303f93c0a5cc9b
url: https://christofseiler.github.io/cellpaintr/
date-released: '2026-07-13'
contact:
- family-names: Seiler
  given-names: Christof
  email: christof.seiler@usz.ch
  orcid: https://orcid.org/0000-0001-8802-3642