To cite circaTime in publications use:

Uysal A (2026). circaTime: Unified Inference of Circadian Phase from Bulk and Pseudobulk Transcriptomes. R package version 0.99.2, https://github.com/dralperenuysal/circaTime.

Uysal A (2026). “circaTime: a unified interface for inferring circadian phase from bulk and pseudobulk transcriptomes.” Manuscript in preparation.

The second entry is a manuscript draft, not yet submitted or published; this file will be updated with final publication details once available.

Corresponding BibTeX entries:

  @Manual{,
    title = {circaTime: Unified Inference of Circadian Phase from Bulk
      and Pseudobulk Transcriptomes},
    author = {Alperen Uysal},
    year = {2026},
    note = {R package version 0.99.2},
    url = {https://github.com/dralperenuysal/circaTime},
  }

  @Unpublished{,
    title = {circaTime: a unified interface for inferring circadian
      phase from bulk and pseudobulk transcriptomes},
    author = {Alperen Uysal},
    year = {2026},
    note = {Manuscript in preparation},
  }