conformeR

Conformal clustering of gene differential expression.

conformeR is a wrapper around the LEMUR R package that adds uncertainty quantification to LEMUR's neighborhood on predicted differential expression, using conformal prediction, and without altering the underlying model.

Installation

conformeR is not yet on CRAN or Bioconductor. Install the development version running:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("juslecl/conformeR")

Usage

library(conformeR)

See ?conformeR for the main entry point.

Vignette

Open it with:

browseVignettes("conformeR")

or, from the R console:

vignette("conformeR")

Paper

Stay tuned!