Package: consensusTADs
Title: Generate Consensus Topologically Associating Domains from
        Multiple Prediction Tools
Version: 0.99.4
Authors@R: 
    person(given = "Pumin",
           family = "Li",
           role = c("aut", "cre"),
           email = "pumin.li@unil.ch",
           comment = c(ORCID = "0000-0003-4750-5404"))
Description: Integrates Topologically Associating Domains (TADs)
        predictions from multiple computational tools to generate
        high-confidence consensus TAD sets. The package implements the
        Measure of Concordance (MoC) metric to quantify agreement
        between different TAD predictions and uses dynamic programming
        algorithms to select optimal non-overlapping TAD boundaries.
        This approach helps resolve inconsistencies between TAD calling
        methods and produces more reliable chromatin domain annotations
        for downstream genomic analyses.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Software, HiC
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports: dplyr, furrr, future, GenomicRanges, IRanges, magrittr, purrr,
        stringr, tibble, tidyr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://github.com/CSOgroup/consensusTADs
BugReports: https://github.com/CSOgroup/consensusTADs/issues
Config/pak/sysreqs: libicu-dev
Repository: https://biocstaging.r-universe.dev
Date/Publication: 2026-07-03 15:01:27 UTC
RemoteUrl: https://github.com/BiocStaging/consensusTADs
RemoteRef: HEAD
RemoteSha: 708b0091f2c6c8c74c07eb95d386155d4bdfbdad
NeedsCompilation: no
Packaged: 2026-10-01 11:09:18 UTC; root
Author: Pumin Li [aut, cre] (ORCID: <https://orcid.org/0000-0003-4750-5404>)
Maintainer: Pumin Li <pumin.li@unil.ch>