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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "crossarrayEWAS" in publications use:'
type: software
license: MIT
title: 'crossarrayEWAS: Design-Aware Region and Block Detection for Cross-Array Longitudinal
  EWAS'
version: 0.99.1
doi: 10.32614/CRAN.package.crossarrayEWAS
abstract: Estimation and region-calling routines for epigenome-wide association studies
  that combine Illumina HumanMethylation450 and MethylationEPIC samples and follow
  subjects over more than one visit. Probe-level effects are fitted within subject,
  so subject identity, array type and chip are absorbed rather than modelled; adjacent
  probes are grouped by within-subject co-methylation; regions are obtained by total-variation
  denoising with a distance-decaying penalty, which places boundaries where the effect
  track jumps instead of thresholding a smooth curve; and long-range blocks are called
  from a three-state hidden semi-Markov model whose transition probabilities decay
  with genomic distance. Selection stability and permutation nulls resample subjects,
  not samples, so a subject's visit series is never split.
authors:
- family-names: Kamieniecka
  given-names: Katarzyna
  email: kkamieni@bradford.ac.uk
  orcid: https://orcid.org/0009-0004-2454-5950
- family-names: McLean
  given-names: Samantha
  email: S.L.Mclean@bradford.ac.uk
  orcid: https://orcid.org/0000-0001-9328-8928
- family-names: Poterlowicz
  given-names: Krzysztof
  email: K.Poterlowicz1@bradford.ac.uk
  orcid: https://orcid.org/0000-0001-6173-5674
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/bioinfbrad/crossarrayEWAS
commit: c865b4852887928742d3fe39529bd72a8b07887e
url: https://github.com/bioinfbrad/crossarrayEWAS
date-released: '2026-10-12'
contact:
- family-names: Kamieniecka
  given-names: Katarzyna
  email: kkamieni@bradford.ac.uk
  orcid: https://orcid.org/0009-0004-2454-5950