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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "exploreDE" in publications use:'
type: software
license: MIT
title: 'exploreDE: Interactive Exploration of Differential Expression Results'
version: 0.99.0
abstract: A Shiny application to help users explore and enjoy their 'omics data, and
  make publication-quality figures. It shows differential expression results from
  RNA-seq, proteomics and CRISPR screens as ordination plots, heatmaps, volcano plots,
  box plots, GO and KEGG pathway views, and ORA and GSEA tables. The app reads AnnData
  ('.h5ad') files in the exploreDE/1.0 layout, which build_explore_h5ad() writes from
  counts, sample tables, DE tables and enrichment results, and the SummarizedExperiment
  results of the FGCZ SUSHI and prolfqua pipelines. App settings are saved and restored
  as JSON session files.
authors:
- family-names: Leary
  given-names: Peter
  email: peter.leary@uzh.ch
  orcid: https://orcid.org/0000-0003-1430-6185
- family-names: Wolski
  given-names: Witold
  email: wewolski@gmail.com
  orcid: https://orcid.org/0000-0002-6468-120X
repository: https://biocstaging.r-universe.dev
repository-code: https://github.com/fgcz/exploreDE
commit: 0a0839713a11b83aecac2e7b0cc3bbc4543f1398
url: https://fgcz.github.io/exploreDE/
date-released: '2026-11-14'
contact:
- family-names: Wolski
  given-names: Witold
  email: wewolski@gmail.com
  orcid: https://orcid.org/0000-0002-6468-120X